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Frontend #225

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merged 2 commits into from
Oct 17, 2023
Merged

Frontend #225

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cc36cd3
Merge pull request #223 from EGA-archive/develop
Oct 10, 2023
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Oct 17, 2023
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374 changes: 374 additions & 0 deletions frontend/src/components/Biosamples/BiosamplesResults.js
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Original file line number Diff line number Diff line change
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import '../Individuals/Individuals.css'
import '../../App.css'
import { useState, useEffect } from 'react'
import axios from 'axios'
import { AuthContext } from '../context/AuthContext'
import { useAuth } from 'oidc-react'
import configData from '../../config.json'
import { useContext } from 'react'
import TableResultsIndividuals from '../Results/IndividualsResults/TableResultsIndividuals'

function BiosamplesResults (props) {
const [showLayout, setShowLayout] = useState(false)

const [beaconsList, setBeaconsList] = useState([])

const [error, setError] = useState(false)
const [response, setResponse] = useState(null)
const [numberResults, setNumberResults] = useState(0)
const [boolean, setBoolean] = useState(false)
const [results, setResults] = useState([])
const [show1, setShow1] = useState(false)
const [show2, setShow2] = useState(false)
const [show3, setShow3] = useState(false)

const [timeOut, setTimeOut] = useState(false)

const [logInRequired, setLoginRequired] = useState(true)
const [messageLoginCount, setMessageLoginCount] = useState('')
const [messageLoginFullResp, setMessageLoginFullResp] = useState('')

const [limit, setLimit] = useState(0)
const [skip, setSkip] = useState(0)

const [skipTrigger, setSkipTrigger] = useState(0)
const [limitTrigger, setLimitTrigger] = useState(0)

const [queryArray, setQueryArray] = useState([])
const [arrayFilter, setArrayFilter] = useState([])

const { getStoredToken, authenticateUser } = useContext(AuthContext)
let queryStringTerm = ''

let res = ''

const auth = useAuth()
let isAuthenticated = auth.userData?.id_token ? true : false

useEffect(() => {
const apiCall = async () => {
if (isAuthenticated === false) {
authenticateUser()
const token = getStoredToken()

if (token !== 'undefined' && token !== null) {
isAuthenticated = true
}
}

if (isAuthenticated) {
setLoginRequired(false)
} else {
setLoginRequired(true)
setMessageLoginCount('PLEASE LOG IN FOR GETTING THE NUMBER OF RESULTS')
setMessageLoginFullResp('PLEASE LOG IN FOR GETTING THE FULL RESPONSE')
}

if (props.query !== null) {
if (props.query.includes(',')) {
queryStringTerm = props.query.split(',')
console.log(queryStringTerm)
queryStringTerm.forEach((element, index) => {
element = element.trim()
if (
element.includes('=') ||
element.includes('>') ||
element.includes('<') ||
element.includes('!') ||
element.includes('%')
) {
if (element.includes('=')) {
queryArray[index] = element.split('=')
queryArray[index].push('=')
} else if (element.includes('>')) {
queryArray[index] = element.split('>')
queryArray[index].push('>')
} else if (element.includes('<')) {
queryArray[index] = element.split('<')
queryArray[index].push('<')
} else if (element.includes('!')) {
queryArray[index] = element.split('!')
queryArray[index].push('!')
} else {
queryArray[index] = element.split('%')
queryArray[index].push('%')
}

console.log(queryArray)
const alphaNumFilter = {
id: queryArray[index][0],
operator: queryArray[index][2],
value: queryArray[index][1]
}
arrayFilter.push(alphaNumFilter)
} else {
const filter2 = {
id: element,
includeDescendantTerms: props.descendantTerm
}
arrayFilter.push(filter2)
}
})
} else {
if (
props.query.includes('=') ||
props.query.includes('>') ||
props.query.includes('<') ||
props.query.includes('!') ||
props.query.includes('%')
) {
if (props.query.includes('=')) {
queryArray[0] = props.query.split('=')
queryArray[0].push('=')
} else if (props.query.includes('>')) {
queryArray[0] = props.query.split('>')
queryArray[0].push('>')
} else if (props.query.includes('<')) {
queryArray[0] = props.query.split('<')
queryArray[0].push('<')
} else if (props.query.includes('!')) {
queryArray[0] = props.query.split('!')
queryArray[0].push('!')
} else {
queryArray[0] = props.query.split('%')
queryArray[0].push('%')
}

const alphaNumFilter = {
id: queryArray[0][0],
operator: queryArray[0][2],
value: queryArray[0][1]
}
arrayFilter.push(alphaNumFilter)
} else {
const filter = {
id: props.query
}
arrayFilter.push(filter)
}
}
}

try {
let res = await axios.get(configData.API_URL + '/info')

beaconsList.push(res.data)

beaconsList.reverse()
console.log(beaconsList)
if (props.query === null) {
// show all individuals

var jsonData1 = {
meta: {
apiVersion: '2.0'
},
query: {
filters: arrayFilter,
includeResultsetResponses: `${props.resultSets}`,
pagination: {
skip: 0,
limit: 0
},
testMode: false,
requestedGranularity: 'record'
}
}
jsonData1 = JSON.stringify(jsonData1)
console.log(jsonData1)

//const token = auth.userData.access_token
// console.log(token)
//const headers = { Authorization: `Bearer ${token}` }

res = await axios.post(configData.API_URL + '/biosamples', jsonData1)

console.log(res)
setTimeOut(true)

if (res.data.responseSummary.numTotalResults < 1) {
setError('No results. Please check the query and retry')
setNumberResults(0)
setBoolean(false)
} else {
res.data.response.resultSets.forEach((element, index) => {
if (res.data.response.resultSets[index].resultsCount > 0) {
console.log(res.data.response.resultSets[index].results.length)
res.data.response.resultSets[index].results.forEach(
(element2, index2) => {
let arrayResult = [
res.data.meta.beaconId,
res.data.response.resultSets[index].results[index2]
]
results.push(arrayResult)
}
)
}
})

setNumberResults(res.data.responseSummary.numTotalResults)
setBoolean(res.data.responseSummary.exists)
}
} else {
var jsonData2 = {
meta: {
apiVersion: '2.0'
},
query: {
filters: arrayFilter,
includeResultsetResponses: `${props.resultSets}`,
pagination: {
skip: skip,
limit: limit
},
testMode: false,
requestedGranularity: 'record'
}
}
jsonData2 = JSON.stringify(jsonData2)
console.log(jsonData2)

//const token = auth.userData.access_token
//console.log(token)
//const headers = { Authorization: `Bearer ${token}` }

//res = await axios.post("https://beacons.bsc.es/beacon-network/v2.0.0/individuals/", jsonData2, { headers: headers })
res = await axios.post(configData.API_URL + '/biosamples', jsonData2)

console.log(res)
setTimeOut(true)

if (
res.data.responseSummary.numTotalResults < 1 ||
res.data.responseSummary.numTotalResults === undefined
) {
setError('No results. Please check the query and retry')
setNumberResults(0)
setBoolean(false)
} else {
console.log(res.data.responseSummary.numTotalResults)
setNumberResults(res.data.responseSummary.numTotalResults)
setBoolean(res.data.responseSummary.exists)

res.data.response.resultSets.forEach((element, index) => {
if (res.data.response.resultSets[index].resultsCount > 0) {
console.log(res.data.response.resultSets[index].results.length)
res.data.response.resultSets[index].results.forEach(
(element2, index2) => {
let arrayResult = [
res.data.meta.beaconId,
res.data.response.resultSets[index].results[index2]
]
results.push(arrayResult)
console.log(arrayResult)
console.log(results)
}
)

console.log(results)
}
})
}
}
} catch (error) {
setError('Error. Please retry')
setTimeOut(false)
console.log(error)
}
}
apiCall()
}, [])

const handleTypeResults1 = () => {
setShow1(true)
setShow2(false)
setShow3(false)
}

const handleTypeResults2 = () => {
setShow2(true)
setShow1(false)
setShow3(false)
}

const handleTypeResults3 = () => {
setShow3(true)
setShow1(false)
setShow2(false)
}

const handleSkipChanges = e => {
setSkip(Number(e.target.value))
}

const handleLimitChanges = e => {
setLimit(Number(e.target.value))
}

const onSubmit = () => {
setSkipTrigger(skip)
setLimitTrigger(limit)
setTimeOut(false)
}
return (
<div>
{timeOut === false && (
<div className='loaderLogo'>
<div className='loader2'>
<div id='ld3'>
<div></div>
<div></div>
<div></div>
</div>
</div>
</div>
)}

<div>
<div>
{' '}
{timeOut && (
<div>
<div className='selectGranularity'>
<h4>Granularity:</h4>
<button className='typeResults' onClick={handleTypeResults1}>
<h5>Boolean</h5>
</button>
<button className='typeResults' onClick={handleTypeResults2}>
<h5>Count</h5>
</button>
<button className='typeResults' onClick={handleTypeResults3}>
<h5>Full response</h5>
</button>
</div>
</div>
)}
{show3 && logInRequired === false && !error && (
<div>
<TableResultsIndividuals
results={results}
beaconsList={beaconsList}
></TableResultsIndividuals>
</div>
)}
{show3 && logInRequired === true && <h3>{messageLoginFullResp}</h3>}
{show3 && error && <h3>&nbsp; {error} </h3>}
<div className='resultsContainer'>
{show1 && boolean && <p className='p1'>YES</p>}
{show1 && !boolean && <p className='p1'>NO</p>}

{show2 && logInRequired === false && numberResults !== 1 && (
<p className='p1'>{numberResults} &nbsp; Results</p>
)}
{show2 && numberResults === 1 && logInRequired === false && (
<p className='p1'>{numberResults} &nbsp; Result</p>
)}
{show2 && logInRequired === true && <h3>{messageLoginCount}</h3>}
</div>
</div>
</div>
</div>
)
}

export default BiosamplesResults
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