Merge Camerian's changes from A la carte into master #32
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
…x. This failed on the first try (I think it timed out waiting for firefox to launch), and succeeded on the second (once firefox had launched). More work needed.
…a command to wait for the webdriver to confirm page is ready
…uing and documenting transferred EC numbers
Making room for actual demo NB
…raping as this is now available in bulk download
…oaded 03-25-2023; avoids the need to visit main metagenome page during data import
…download file in formulating EC and KO urls
…e of EC/KO list is known from JGI bulk-download metadata file
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
This is a systematic change in how data will be collected from JGI.
Rather than prompting the web for the entire database, this update will assume the User has gone to the IMG/M portal, and acquired metadata for the genomes/metagenomes they want. This data will be used to retrive the relavant information, including the KOs and ECs that appear in the genome.