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Switch to shr_drydep_mod module #1843

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merged 3 commits into from
Sep 7, 2022
Merged

Switch to shr_drydep_mod module #1843

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e1aef3d
use shr_drydep_mod module
fvitt Sep 1, 2022
de99340
more drydep changes
fvitt Sep 2, 2022
45c0c1f
include dep_data_file namelist setting; correct fates/drydep check
fvitt Sep 6, 2022
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4 changes: 2 additions & 2 deletions Externals.cfg
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Expand Up @@ -48,7 +48,7 @@ tag = cime6.0.45
required = True

[cmeps]
tag = cmeps0.13.68
tag = cmeps0.13.70
protocol = git
repo_url = https://github.com/ESCOMP/CMEPS.git
local_path = components/cmeps
Expand All @@ -63,7 +63,7 @@ externals = Externals_CDEPS.cfg
required = True

[cpl7]
tag = cpl7.0.13
tag = cpl7.0.14
protocol = git
repo_url = https://github.com/ESCOMP/CESM_CPL7andDataComps
local_path = components/cpl7
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11 changes: 5 additions & 6 deletions bld/CLMBuildNamelist.pm
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Expand Up @@ -2726,8 +2726,8 @@ sub setup_logic_do_transient_urban {
# for them to be unset if that will be their final state):
# - flanduse_timeseries
#
# NOTE(kwo, 2021-08-11) I based this function on setup_logic_do_transient_lakes.
# As in NOTE(wjs, 2020-08-23) I'm not sure if all of the checks here are truly important
# NOTE(kwo, 2021-08-11) I based this function on setup_logic_do_transient_lakes.
# As in NOTE(wjs, 2020-08-23) I'm not sure if all of the checks here are truly important
# for transient urban (in particular, my guess is that collapse_urban could probably be done with transient
# urban - as well as transient pfts and transient crops for that matter), but some of
# the checks probably are needed, and it seems best to keep transient urban consistent
Expand Down Expand Up @@ -3669,11 +3669,10 @@ sub setup_logic_dry_deposition {
" Use the '--no-drydep' option when '-bgc fates' is activated");
}
add_default($opts, $nl_flags->{'inputdata_rootdir'}, $definition, $defaults, $nl, 'drydep_list');
add_default($opts, $nl_flags->{'inputdata_rootdir'}, $definition, $defaults, $nl, 'drydep_method');
add_default($opts, $nl_flags->{'inputdata_rootdir'}, $definition, $defaults, $nl, 'dep_data_file');
} else {
if ( defined($nl->get_value('drydep_list')) ||
defined($nl->get_value('drydep_method')) ) {
$log->fatal_error("drydep_list or drydep_method defined, but drydep option NOT set");
if ( defined($nl->get_value('drydep_list')) ) {
$log->fatal_error("drydep_list defined, but drydep option NOT set");
}
}
}
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4 changes: 3 additions & 1 deletion bld/namelist_files/namelist_defaults_drydep.xml
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Expand Up @@ -17,7 +17,9 @@ attributes from the config_cache.xml file (with keys converted to upper-case).

<drydep_list>'O3','NO2','HNO3','NO','HO2NO2','CH3OOH','CH2O','CO','H2O2','CH3COOOH','PAN','MPAN','C2H5OOH','ONIT','POOH','C3H7OOH','ROOH','CH3COCHO','CH3COCH3','Pb','ONITR','MACROOH','XOOH','ISOPOOH','CH3OH','C2H5OH','CH3CHO','GLYALD','HYAC','HYDRALD','ALKOOH','MEKOOH','TOLOOH','TERPOOH','CH3COOH','CB1','CB2','OC1','OC2','SOA','SO2','SO4','NH3','NH4NO3'
</drydep_list>
<drydep_method>xactive_lnd</drydep_method>

<!-- effective Henry's coef data for wet and dry deposition -->
<dep_data_file>atm/cam/chem/trop_mozart/dvel/dep_data_c201019.nc</dep_data_file>

<!-- Defaults for megan_emis_nl -->

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25 changes: 10 additions & 15 deletions bld/namelist_files/namelist_definition_drv_flds.xml
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Expand Up @@ -63,28 +63,23 @@
<!-- drydep Namelists -->
<!-- ======================================================================================== -->

<entry id="drydep_method"
type="char*16"
category="dry-deposition"
group="drydep_inparm"
valid_values="xactive_lnd,xactive_atm,table">
Where dry deposition is calculated (from land, atmosphere, or from a table)
This specifies the method used to calculate dry
deposition velocities of gas-phase chemical species. The available methods
are:
'table' - prescribed method in CAM
'xactive_atm' - interactive method in CAM
'xactive_lnd' - interactive method in CLM
</entry>

<entry id="drydep_list"
<entry id="drydep_list"
type="char*32(300)"
category="dry-deposition"
group="drydep_inparm"
valid_values="">
List of species that undergo dry deposition.
</entry>

<entry id="dep_data_file"
type="char*500"
input_pathname="abs"
category="dry_deposition"
group="drydep_inparm"
valid_values="" >
Full pathname of file containing gas phase deposition data including effective
Henry's law coefficients.
</entry>

<!-- ======================================================================================== -->
<!-- Fire emissions fluxes -->
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