Merge pull request #1 from Eco-Flow/chopgo_pythonupdate

Chopgo pythonupdate
Eco-Flow · Aug 19, 2024 · f9ab89a · f9ab89a
2 parents b05764b + 3722873
commit f9ab89a
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diff --git a/.github/workflows/push-chopgo.yml b/.github/workflows/push-chopgo.yml
@@ -6,7 +6,7 @@ on:
 #When updating images change image tag below to correspond to changes
 env:
   IMAGE_NAME: chopgo
-  IMAGE_TAG: r-4.3.2_python-3.10_perl-5.38
+  IMAGE_TAG: r-4.3.2_python-3_perl-5.38
 
 jobs:
   build:

diff --git a/README.md b/README.md
@@ -23,7 +23,7 @@ Copy an existing workflow yaml i.e. `cp push-jcvi.yml push-your_image_name.yml`
 
 use flag `-f` to specifically choose a Dockerfile, else it will assume `Dockerfile`
 
-2. Test the container 
+2. Test the container (use doecker to open the container and run the program/s of interest)
 
 `docker run --rm -it my-image bash`
 

diff --git a/chopgo/Dockerfile b/chopgo/Dockerfile
@@ -1,7 +1,7 @@
 FROM rocker/r-base:4.3.1
 
 RUN apt-get update && \
-    apt-get install -y python3.10 wget procps libcurl4-openssl-dev libssl-dev perl && \
+    apt-get install -y python3 wget procps libcurl4-openssl-dev libssl-dev perl && \
     apt-get clean -y && rm -rf /var/lib/apt/lists/*
 
 RUN Rscript -e "install.packages(c('BiocManager', 'devtools', 'dplyr', 'readxl', 'writexls', 'plyr', 'gdata', 'pheatmap', 'ashr', 'ggplot2', 'ggstar'))"