fixed permissions again

Eco-Flow · Mar 18, 2024 · 6838c3f · 6838c3f
1 parent 0553d38
commit 6838c3f
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diff --git a/RESUME b/RESUME
@@ -0,0 +1,5 @@
+#!/bin/bash
+
+set -euo pipefail
+
+nextflow run main.nf -profile docker,local,test --clean false -resume
diff --git a/conf/test.config b/conf/test.config
diff --git a/data/derep-input/ERR2537816.filtered.fasta b/data/derep-input/ERR2537816.filtered.fasta
diff --git a/data/filter-input/ERR2537816.assembled.fastq.gz b/data/filter-input/ERR2537816.assembled.fastq.gz
diff --git a/data/merge-input/ERR2537816.trimmed_1.trim.fastq.gz b/data/merge-input/ERR2537816.trimmed_1.trim.fastq.gz
diff --git a/data/merge-input/ERR2537816.trimmed_2.trim.fastq.gz b/data/merge-input/ERR2537816.trimmed_2.trim.fastq.gz
diff --git a/data/processing-input/ERR2537816.tsv b/data/processing-input/ERR2537816.tsv
diff --git a/data/sintax-input/ERR2537816.derep.fasta b/data/sintax-input/ERR2537816.derep.fasta
diff --git a/modules/nf-core/custom/dumpsoftwareversions/environment.yml b/modules/nf-core/custom/dumpsoftwareversions/environment.yml
diff --git a/modules/nf-core/custom/dumpsoftwareversions/main.nf b/modules/nf-core/custom/dumpsoftwareversions/main.nf
diff --git a/modules/nf-core/custom/dumpsoftwareversions/meta.yml b/modules/nf-core/custom/dumpsoftwareversions/meta.yml
diff --git a/modules/nf-core/custom/dumpsoftwareversions/tests/main.nf.test b/modules/nf-core/custom/dumpsoftwareversions/tests/main.nf.test
diff --git a/modules/nf-core/custom/dumpsoftwareversions/tests/main.nf.test.snap b/modules/nf-core/custom/dumpsoftwareversions/tests/main.nf.test.snap
diff --git a/modules/nf-core/custom/dumpsoftwareversions/tests/tags.yml b/modules/nf-core/custom/dumpsoftwareversions/tests/tags.yml
diff --git a/nextflow_schema.json b/nextflow_schema.json
diff --git a/nf-test.config b/nf-test.config
diff --git a/tests/modules/local/processing.nf.test b/tests/modules/local/processing.nf.test
diff --git a/tests/modules/local/processing.nf.test.snap b/tests/modules/local/processing.nf.test.snap
diff --git a/tests/modules/local/r_processing.nf.test b/tests/modules/local/r_processing.nf.test
diff --git a/tests/modules/local/r_processing.nf.test.snap b/tests/modules/local/r_processing.nf.test.snap
diff --git a/tests/modules/local/vsearch_derep.nf.test b/tests/modules/local/vsearch_derep.nf.test
diff --git a/tests/modules/local/vsearch_fastq_filter.nf.test b/tests/modules/local/vsearch_fastq_filter.nf.test
diff --git a/tests/modules/local/vsearch_fastq_filter.nf.test.snap b/tests/modules/local/vsearch_fastq_filter.nf.test.snap
diff --git a/tests/modules/nf-core/cutadapt/main.nf.test b/tests/modules/nf-core/cutadapt/main.nf.test
diff --git a/tests/modules/nf-core/pear/main.nf.test b/tests/modules/nf-core/pear/main.nf.test
diff --git a/tests/modules/nf-core/pear/main.nf.test.snap b/tests/modules/nf-core/pear/main.nf.test.snap
diff --git a/tests/modules/nf-core/vsearch/sintax/main.nf.test b/tests/modules/nf-core/vsearch/sintax/main.nf.test
diff --git a/tests/nextflow.config b/tests/nextflow.config