Add Surveillance Genomes

Add surveillance genomes

There is more and more surveillance genomes in NCBI. We do not analyse those genomes but need to store them to show on the website Get the list of surveillance genomes with

grep -h surveillance assembly_summary_bacteria_genbank.txt assembly_summary_bacteria_refseq.txt assembly_summary_archaea_genbank.txt assembly_summary_archaea_refseq.txt > surveillance_genomes/surveillance_genomes_assembly_summary.txt
cut -f 1 surveillance_genomes_assembly_summary.txt > surveillance_genomes_list.lst
gtdb_migration_tk add_surveillance_genomes --hostname <hostname> -u <user> -p <password> -d gtdb_release202_temp surveillance_genomes_list.lst