fix(stats): Update Phylum PD wording.

Ecogenomics · Sep 3, 2024 · 9c5a6f0 · 9c5a6f0
1 parent e1886e2
commit 9c5a6f0
Show file tree

Hide file tree

Showing 2 changed files with 5 additions and 4 deletions.
diff --git a/components/stats/PhylumPd.vue b/components/stats/PhylumPd.vue
@@ -103,8 +103,8 @@ export default Vue.extend({
     return {
       headers: [
         {text: 'Phylum', value: 'taxon'},
-        {text: 'Scaled (%)', value: 'scaled'},
-        {text: 'Unscaled (%)', value: 'unscaled'},
+        {text: 'Original (%)', value: 'unscaled'},
+        {text: 'RED-normalised (%)', value: 'scaled'},
         {text: 'Abs. difference', value: 'abs'}
       ],
       collapsePhyla: false

diff --git a/pages/stats/r220.vue b/pages/stats/r220.vue
@@ -605,7 +605,8 @@
 
       <template #phylum-pd>
 
-        The following tables show the Phylogenetic Diversity (PD) expressed as a percentage of branch lengths in the phylogenetic tree that are unique to each phylum in both the unscaled, and RED scaled reference trees.
+        The following tables show the percentage contribution of each phylum to the Phylogenetic Diversity (PD) of the original and RED-normalised GTDB reference trees.<br><br>
+        Phyla that are polyphyletic in the reference tree (suffixed as _A, _B, etc) can be collapsed using the toggle at the top right of each table. Click on headers to sort by column.
         <br><br>
 
         <h3>Archaea:</h3>
@@ -667,7 +668,7 @@ export default Vue.extend({
       {text: 'Comparison of GTDB and NCBI taxa', ref: 'comparison-of-gtdb-and-ncbi-taxa'},
       {text: 'Genomic statistics', ref: 'genomic-statistics'},
       {text: 'Nomenclatural types per rank', ref: 'nomenclatural-types-per-rank'},
-      {text: 'Phylum PD', ref: 'phylum-pd'}
+      {text: 'Phylum phylogenetic diversity', ref: 'phylum-pd'}
     ],
 
     phylumPdArc: [