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# subadult_size_variable_2022 | ||
This repository houses the research compendium to accompany the article: "An alternative size variable for allometric investigations in subadults" | ||
# Contents | ||
This repository contains full documentation for the paper: | ||
> Chu, E.Y., Stull, K.E., & Sylvester, A.D. (2022). An alternative size variable for allometric investigations in subadults. *In review.* | ||
To run the code for this paper locally, please ensure that [R](https://cran.r-project.org/), and optionally [RStudio](https://www.rstudio.com/), are installed on the local system. | ||
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### How to cite | ||
Please cite this compendium as: | ||
> Chu, E.Y., Stull, K.E., & Sylvester, A.D. (2022). Compendium of R code and data for *An alternative size variable for allometric investigations in subadults.* Accessed *Current Date*. | ||
## The data | ||
All data are from the [Subadult Virtual Anthropology Database](https://zenodo.org/communities/svad) (SVAD). Specifically, this project uses portions of data from the [United States](10.5281/zenodo.5193208) and [South Africa](https://zenodo.org/record/3950301#.YmRaW9rMIdU), which are also directly provided in the [data folder](data). | ||
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## How to use this repository | ||
There are two ways to add this repository to a local system: | ||
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1. If you are using a Mac operating system or have another shell terminal system (such as [Git for Windows](https://gitforwindows.org/)), open your terminal and enter the following commands: | ||
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```console | ||
cd "file/path/to/desired/repository/location" # set file location | ||
git clone https://github.com/ElaineYChu/subadult_sv_2022 # clone the repository | ||
cd subadult_sv_2022 # enter the new directory | ||
ls # check that there are files in the new directory | ||
``` | ||
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2. If you do not have or are unfamiliar with terminal command systems, you may also locate and click on the green button in this repository labeled "Code" with a downward arrow and select "Download ZIP." This will download a zipped file to your local system (probably found in your *Downloads* folder). Extract the embedded folder ("subadult_sv_2022-main") and relocate it to your desired folder location. | ||
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**Next, rename the folder to "subadult_sv_2022" before proceeding further.** | ||
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Inside the **subadult_sv_2022** folder, you should find the following folders and files: | ||
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* [data](data) - A folder containing the original subsetted data from SVAD and subsequent files after data manipulation | ||
* [results](results) - A folder housing the resulting files from all analyses | ||
* [documentation](documentation.html) - An HTML file containing all code and analyses to replicate publication results | ||
* [elaine_theme](elaine_theme.R) - A personalized theme for plots using `ggplot2` | ||
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"long_bone","method","slope","study" | ||
"Humerus","Stature",1.03,"Auerbach & Sylvester (2011)" | ||
"Radius","Stature",1.23,"Auerbach & Sylvester (2011)" | ||
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"size_var","slope","intercept","diff" | ||
"FMSB",1.01127702088615,-4.24584978852087,0.0112770208861523 | ||
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"GM_db",1.06665307476847,-3.96762243649149,0.0666530747684728 | ||
"GM_fem",1.08971974762679,-4.2179187099202,0.0897197476267897 | ||
"GM_tib",1.1554895906841,-4.79727402659138,0.1554895906841 | ||
"GM_hum",1.02697255534676,-3.94411897211456,0.0269725553467637 | ||
"GM_rad",0.949709497540908,-3.98540751274892,0.0502905024590922 | ||
"GM_len",1.35516393217667,-4.30583487846494,0.355163932176669 |
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"Radius","GM_Midshaft",1.18824008753145 | ||
"Radius","GM_Length",0.887725719761143 | ||
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"Femur","GM_Midshaft",1.4803044853351 | ||
"Femur","GM_Length",1.10592495447597 | ||
"Tibia","Stature",1.44446148435753 | ||
"Tibia","RMSB",1.46061194776905 | ||
"Tibia","FMSB",1.42846971759408 | ||
"Tibia","GM_Midshaft",1.42673240780881 | ||
"Tibia","GM_Length",1.06590163630976 |
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"long_bone","method","slope" | ||
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"Tibia","GM_Length",1.06285161635958 |