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feat: update of dockerfile to use more secure image; #1546

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feat: update of dockerfile to use more secure image; #1546

Merge branch 'v110/updates' of github.com:mvforster/ensembl-vep into …
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Travis CI / Travis CI - Pull Request failed Dec 12, 2023 in 19m 40s

Build Failed

The build failed. This is a change from the previous build, which errored.

Details

This is a pull request build.

It is running a build against the merge commit, after merging #1546 feat: update of dockerfile to use more secure image;.
Any changes that have been made to the release/110 branch before the build ran are also included.

Jobs and Stages

This build has six jobs, running in two sequential stages.

Stage 1: test

This stage failed.

Job Perl ENV OS State
3604.1 5.10 [One of the secure variables in your .travis.yml has an invalid format.] Linux failed
3604.2 5.14 [One of the secure variables in your .travis.yml has an invalid format.] Linux failed
3604.3 5.18 [One of the secure variables in your .travis.yml has an invalid format.] Linux failed
3604.4 5.22 [One of the secure variables in your .travis.yml has an invalid format.] Linux failed
3604.5 5.26 [One of the secure variables in your .travis.yml has an invalid format.] Linux failed

Stage 2: trigger_dependent_builds

This stage canceled.

Job Perl ENV OS State
3604.6 5.14 [One of the secure variables in your .travis.yml has an invalid format.] Linux canceled

Build Configuration

Build Option Setting
Language Perl
Operating System Linux (Trusty)
Perl Versions 5.10, 5.14, 5.18, 5.22, 5.26
Build Configuration
{
  "language": "perl",
  "os": [
    "linux"
  ],
  "dist": "trusty",
  "perl": [
    "5.10",
    "5.14",
    "5.18",
    "5.22",
    "5.26"
  ],
  "env": [
    "global=[One of the secure variables in your .travis.yml has an invalid format.] jobs={:COVERALLS=>\"true\", :DB=>\"mysql\"}"
  ],
  "sudo": true,
  "group": "deprecated",
  "addons": {
    "apt": {
      "packages": [
        "unzip",
        "mysql-server-5.6",
        "apache2",
        "libmysqlclient-dev",
        "libpng12-dev",
        "libssl-dev",
        "openssl",
        "mysql-client-5.6",
        "mysql-client-core-5.6"
      ]
    }
  },
  "before_install": [
    "export ENSEMBL_BRANCH=release/110",
    "git clone --branch $ENSEMBL_BRANCH --depth 1 https://github.com/Ensembl/ensembl-test.git",
    "git clone --branch $ENSEMBL_BRANCH --depth 1 https://github.com/Ensembl/ensembl.git",
    "git clone --branch $ENSEMBL_BRANCH --depth 1 https://github.com/Ensembl/ensembl-io.git",
    "git clone --branch $ENSEMBL_BRANCH --depth 1 https://github.com/Ensembl/ensembl-funcgen.git",
    "git clone --branch $ENSEMBL_BRANCH --depth 1 https://github.com/Ensembl/ensembl-variation.git",
    "export CWD=$PWD",
    "export DEPS=$HOME/dependencies",
    "mkdir -p $DEPS",
    "cd $DEPS",
    "$CWD/travisci/get_dependencies.sh",
    "cd $CWD"
  ],
  "install": [
    "export CWD=$PWD",
    "export DEPS=$HOME/dependencies",
    "export KENT_SRC=\"$DEPS/kent-335_base/src\"",
    "export HTSLIB_DIR=\"$DEPS/htslib\"",
    "export MACHTYPE=$(uname -m)",
    "export CFLAGS=\"-fPIC\"",
    "export PERL5LIB=$DEPS/bioperl-live:$PERL5LIB",
    "cd $DEPS",
    "$CWD/travisci/build_c.sh",
    "cd $CWD",
    "cpanm --quiet --installdeps --with-recommends --notest --cpanfile ensembl/cpanfile .",
    "cpanm --quiet --installdeps --with-recommends --notest .",
    "cpanm --quiet -n Devel::Cover::Report::Coveralls",
    "cp travisci/MultiTestDB.conf.travisci  t/MultiTestDB.conf"
  ],
  "script": [
    "./travisci/harness.sh"
  ],
  "jobs": {
    "include": [
      {
        "stage": "trigger_dependent_builds",
        "script": [
          "./travisci/trigger-dependent-build.sh"
        ],
        "perl": "5.14"
      }
    ]
  },
  "notifications": {
    "email": [
      {
        "on_success": "always",
        "on_failure": "always"
      }
    ]
  }
}