fix check notes

EvolEcolGroup · Nov 4, 2023 · f18bad6 · f18bad6
1 parent 2c8c19a
commit f18bad6
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Showing 11 changed files with 36 additions and 28 deletions.
diff --git a/R/blockcv2rsample.R b/R/blockcv2rsample.R
@@ -7,6 +7,7 @@
 #' @returns an `rsample` object
 #' @export
 #' @examples
+#' \donttest{
 #' library(blockCV)
 #' points <- read.csv(system.file("extdata/", "species.csv", package = "blockCV"))
 #' pa_data <- sf::st_as_sf(points, coords = c("x", "y"), crs = 7845)
@@ -20,6 +21,7 @@
 #' ) # find evenly dispersed folds
 #' sb1_rsample <- blockcv2rsample(sb1, pa_data)
 #' class(sb1_rsample)
+#' }
 blockcv2rsample <- function(x, data) {
   splits <- lapply(
     x$folds_list,

diff --git a/R/maxent.R b/R/maxent.R
@@ -14,6 +14,7 @@
 #' @param regularization_multiplier  numeric, a constant to adjust regularization
 #' @returns a [`model_spec`] for a `maxent` model
 #' @examples
+#' \donttest{
 #' # format the data
 #' data("bradypus", package = "maxnet")
 #' bradypus_tb <- tibble::as_tibble(bradypus) %>%
@@ -42,7 +43,7 @@
 #' maxent_tune_res <- maxent_spec %>%
 #'   tune_grid(presence ~ ., cv, grid = 3)
 #' show_best(maxent_tune_res, metric = "roc_auc")
-#'
+#' }
 #' @export
 maxent <-
   function(mode = "classification", engine = "maxnet", feature_classes = NULL,

diff --git a/R/plot_pres_vs_abs.R b/R/plot_pres_vs_abs.R
@@ -9,6 +9,7 @@
 #' the first level of this factor
 #' @returns a `patchwork` composite plot
 #' @examples
+#' \donttest{
 #' data("bradypus", package = "maxnet")
 #' bradypus_tb <- tibble::as_tibble(bradypus) %>%
 #'   dplyr::mutate(presence = relevel(
@@ -20,7 +21,7 @@
 #'   select(-ecoreg)
 #'
 #' bradypus_tb %>% plot_pres_vs_bg(presence)
-#'
+#' }
 #' @export
 
 plot_pres_vs_bg <- function(

diff --git a/man/blockcv2rsample.Rd b/man/blockcv2rsample.Rd
diff --git a/man/maxent.Rd b/man/maxent.Rd
diff --git a/man/plot_pres_vs_bg.Rd b/man/plot_pres_vs_bg.Rd
diff --git a/man/sample_pseudoabs_time.Rd b/man/sample_pseudoabs_time.Rd
diff --git a/man/sdm_spec_boost_tree.Rd b/man/sdm_spec_boost_tree.Rd
diff --git a/man/sdm_spec_maxent.Rd b/man/sdm_spec_maxent.Rd
diff --git a/man/sdm_spec_rand_forest.Rd b/man/sdm_spec_rand_forest.Rd
diff --git a/man/simple_ensemble.Rd b/man/simple_ensemble.Rd