Feature/SOF-7476 update: rewrite Standata to new specs

.gitignore

@@ -9,6 +9,7 @@ __pycache__/
 # Distribution / packaging
 .Python
 build/
+!src/py/mat3ra/standata/build
 develop-eggs/
 dist/
 downloads/

build_runtime_data.js

@@ -62,25 +62,25 @@ buildAsset({
 
 buildAsset({
     assetPath: "./materials/categories.yml",
-    targetPath: "./src/py/mat3ra/standata/materials.py",
+    targetPath: "./src/py/mat3ra/standata/data/materials.py",
     contentGenerator: (content) =>
         `import json\n\nmaterials_data = json.loads(r'''${JSON.stringify(content)}''')\n`,
 });
 buildAsset({
     assetPath: "./properties/categories.yml",
-    targetPath: "./src/py/mat3ra/standata/properties.py",
+    targetPath: "./src/py/mat3ra/standata/data/properties.py",
     contentGenerator: (content) =>
         `import json\n\nproperties_data = json.loads(r'''${JSON.stringify(content)}''')\n`,
 });
 buildAsset({
     assetPath: "./applications/categories.yml",
-    targetPath: "./src/py/mat3ra/standata/applications.py",
+    targetPath: "./src/py/mat3ra/standata/data/applications.py",
     contentGenerator: (content) =>
         `import json\n\napplications_data = json.loads(r'''${JSON.stringify(content)}''')\n`,
 });
 buildAsset({
     assetPath: "./workflows/categories.yml",
-    targetPath: "./src/py/mat3ra/standata/workflows.py",
+    targetPath: "./src/py/mat3ra/standata/data/workflows.py",
     contentGenerator: (content) =>
         `import json\n\nworkflows_data = json.loads(r'''${JSON.stringify(content)}''')\n`,
 });

pyproject.toml

@@ -19,11 +19,31 @@ dependencies = [
     "pyyaml",
     "pandas",
     "typer",
+    "pydantic",
 ]
 
 [project.optional-dependencies]
-dev = ["pre-commit", "black", "ruff", "isort", "mypy", "pip-tools", "express-py"]
-tests = ["pytest", "pytest-cov", "pytest-mock"]
+dev = [
+    "pre-commit",
+    "black",
+    "ruff",
+    "isort",
+    "mypy",
+    "pip-tools",
+    "express-py"
+]
+tests = [
+    "coverage[toml]>=5.3",
+    "pytest",
+    "pytest-cov",
+    # B/c of https://github.com/binary-husky/gpt_academic/issues/1237
+    "gradio",
+    "pydantic",
+]
+all = [
+    "mat3ra-standata[tests]",
+    "mat3ra-standata[dev]",
+]
 
 # Entrypoint scripts can be defined here, see examples below.
 [project.scripts]
@@ -60,10 +80,10 @@ extend-exclude = '''
 # Exclude a variety of commonly ignored directories.
 extend-exclude = [
     "src/js",
-    "src/py/mat3ra/standata/materials.py",
-    "src/py/mat3ra/standata/workflows.py",
-    "src/py/mat3ra/standata/applications.py",
-    "src/py/mat3ra/standata/properties.py",
+    "src/py/mat3ra/standata/data/materials.py",
+    "src/py/mat3ra/standata/data/workflows.py",
+    "src/py/mat3ra/standata/data/applications.py",
+    "src/py/mat3ra/standata/data/properties.py",
     "tests/js",
 ]
 line-length = 120

src/py/mat3ra/standata/__init__.py

@@ -1 +0,0 @@
-from .base import Standata