Skip to content

FADHLyemen/metabolomics_glmnet

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

4 Commits
 
 
 
 
 
 

Repository files navigation

F Alakwaa, R Schlueter, P Benny, A Gurary, G Xie, W Jia, S Chun, I Chern,"Metabolomics profile of umbilical cord blood is associated with maternal pre-pregnant obesity in a prospective multi-ethnic cohort displaying health disparities" bioRxiv, 264374

https://www.biorxiv.org/content/early/2018/02/13/264374.1

https://pubs.acs.org/doi/10.1021/acs.jproteome.9b00319

problem and objectives

The link between abnormal fetal metabolomic profiles and maternal obesity has not yet been fully elucidated. In this study, we analyzed the fetal cord blood metabolomes of obese and non-obese mothers to identify potential metabolomic biomarkers associated with maternal obesity.

methods

A penalized regression model was used to identify metabolites which contributed the most to classifying obese and non-obese samples. We adjusted metabolites for ethnicity, gravidity, parity and maternal age. Consensus Pathway database (CPDB) online tool was used for metabolomics pathway analysis.

Image of Block Diagram

results

Of 230 detected untargeted and targeted metabolites, 29 were selected by the elastic net penalized regression method. The accuracy of the logistic regression model using these 29 metabolites (obese versus normal) trained on 80% of the samples and tested on 20% was 0.97. In the obese samples, 17 metabolites were increased, and 12 were decreased. Galactonic acid was identified as the most important predictor of obese-normal status in our cohort.

Image of Block Diagram

Image of Block Diagram

About

No description, website, or topics provided.

Resources

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published