FEDI Toolbox

Fetal and Neonatal Development Imaging (FEDI) toolbox is a comprehensive, free, open-source toolbox that provides a suite of command-line tools dedicated to the processing and analysis of fetal and neonatal MRI data.

Note : FEDI is under active development.

Key Features

• Outlier detection for dMRI
• Motion Correction for dMRI
• A complete pipeline for fetal dMRI
• Many other features coming soon

Installation: Option 1

To install the FEDI toolbox, open a terminal and type:

pip install fedi

Installation : Option 2

To install the FEDI toolbox, clone the repository and add the necessary paths to your .bashrc file:

git clone https://github.com/FEDIToolbox/FEDI.git
cd FEDI/FEDI/scripts
FEDI_SCRIPTS=$(pwd)
echo 'export PATH="${FEDI_SCRIPTS}:$PATH"' >> ~/.bashrc
source ~/.bashrc

Dependencies

Recommended to use Anaconda Python distribution.

• DIPY
• CVXPY
• MRtrix3
• FSL
• ANTs.
• Numpy, Scipy, Nibabel, Matplotlib

Documentation

The full documentation is available at FEDI.

For additional details, please visit the main repository.

Contact

For questions, issues, or suggestions, please open an issue.