Instantiate the new ChRIS that uses the new Flask based pfcon

ChRIS based on the new Flask pfcon

Abstract

This page provides instructions to instantiate and test the new ChRIS that uses the new Flask-based pfcon and pman microservices

Instantiate the new ChRIS

1. Build local pman

git clone https://github.com/FNNDSC/pman.git
cd pman
git checkout flask
docker build -t local/pman .

2. Build local pfcon

git clone https://github.com/FNNDSC/pfcon.git
cd pfcon
git checkout flask
docker build -t local/pfcon .

3. Build local CUBE

git clone https://github.com/FNNDSC/ChRIS_ultron_backEnd.git
cd ChRIS_ultron_backEnd
git checkout pfcon_flask
docker build -t local/chris:dev -f Dockerfile_dev .

4. Run CUBE

In docker-compose_dev.yml change CHRISREPO, PFCONREPO and PMANREPO to local

cd ChRIS_ultron_backEnd
./make.sh

Optionally add an additional remote environment with an interactive pfcon on another terminal for deeper testing

1. Build local dev pfcon

cd pfcon
git checkout flask
docker build -t local/pfcon:dev -f Dockerfile_dev .

2. Modify pfcon/docker-compose_dev.yml to use local/pfcon:dev and local/pman

3. Run interactive pfcon

cd pfcon
mkdir -p FS/remote
export STOREBASE=$(pwd)/FS/remote
docker-compose -f docker-compose_dev.yml run --service-ports pfcon_service

4. Add the new pfcon-pfioh-pman instances as a remote environment

chris_dev=$(docker ps -f ancestor=local/chris:dev -f name=chris_dev -q)
docker exec $chris_dev python plugins/services/manager.py add ipfcon http://<your_machine_ip_addr>:5006  --description "Interactive pfcon"

5. Register your testing plugins with the new ipfcon compute resource

Upload your test plugin to the ChRIS store (e.g. pl-fshack):

./utils/scripts/upload_plugin.sh chris pl-fshack fnndsc/pl-fshack https://github.com/FNNDSC/pl-fshack

Register your test plugin with the ipfcon compute resource

docker exec $chris_dev python plugins/services/manager.py register ipfcon --pluginname pl-fshack