explicitly sync dependencies on gh actions for womtool and test run

FredHutch · Jan 9, 2025 · eca016a · eca016a
1 parent eaa654b
commit eca016a
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diff --git a/.github/workflows/cromwell-test-run.yml b/.github/workflows/cromwell-test-run.yml
@@ -50,6 +50,9 @@ jobs:
       - name: Set up Python
         run: uv python install 3.13
 
+      - name: Install dependencies
+        run: uv sync --all-extras
+
       - name: Execute Test Run of WDL Workflows
         env:
           CROMWELL_PATH: cromwell-86.jar

diff --git a/.github/workflows/womtools-validate.yml b/.github/workflows/womtools-validate.yml
@@ -49,6 +49,9 @@ jobs:
       - name: Set up Python
         run: uv python install 3.13
 
+      - name: Install dependencies
+        run: uv sync --all-extras
+
       - name: Validate WDL Scripts
         env:
           WOMTOOL_PATH: womtool-86.jar