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JBrowse 1.16.4

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@rbuels rbuels released this 10 Apr 17:39

Minor improvements

  • Added indexedFeatures tracklist attribute for GFF3Tabix track types
    which controls the feature types from a GFF3Tabix file that are
    indexed. Thanks to @loraine-gueguen for the idea and implementation!
    (pull #1337, @loraine-guegen)

  • Added inferHTMLSubfeatures which automatically creates multiple
    mRNA transcripts from a single gene parent feature. Thanks to
    @abretaud for the idea and implementation! Note that this is enabled
    by default now (pull #1343, pull #1340)

  • Updated jbrowse.org website to run entirely off amazon S3 (pull #1347,
    pull #1348)

Bug fixes

  • Added better error reporting to GFF3Tabix tracks for if a parsing
    error occured. Thanks to @nathanhaigh for reporting (@cmdcolin)

  • Added fix for VCF that don't contain alternative alleles (@cmdcolin)

  • Added better error handling if there is a case where a tabix file is
    loaded that is on a genome longer than 2^29. CSI indexes are needed for
    this. Old versions of tabix which hadn't invented CSI would generate
    invalid tabix indexes in this case. Thanks to Hans Vasquez-Gross for
    reporting (@cmdcolin)

  • Fixed link in documentation. Thanks @agarciamontoro (pull #1341)

  • Fixed issue with ucsc-to-json.pl creating subfeatures with the wrong
    strand. Thanks to @sachalau for finding and fixing (pull #1346)