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@rbuels rbuels released this 12 Jun 17:29
1.16.5-release
8a041eb

Minor improvements

  • Added better error reporting if there is a BAI file for a genome that
    is longer than 2^29 and requires a CSI index

  • Added default dontRedispatch=chromosome,region which avoids long
    GFF3Tabix redispatching for common gff3 types that don't need it.

  • Added a hideIframeDialogUrl option to hide the iframe url in a
    iframeDialog popup. Thanks to @mictadlo for the suggestion (issue
    #1365)

  • Updated @gmod/tabix and @gmod/bam to unzip bgzf chunks as they are
    received instead of performing chunk merges. This also allows
    actual fileOffset to be used as a feature ID instead of CRC32 hash
    (@cmdcolin)

  • Added regularization of chromosome names using roman numerals,
    common in both S. cerevisiae and C. elegans genome communities.
    Thanks to @scottcain for assistance (pull #1376, @cmdcolin)

  • Added ability for vertical scroll events to bubble out of the jbrowse
    div or iframe, which can be more intuitive in embedded jbrowse's.
    Otherwise, the GenomeView stopped all vertical scroll events in it's
    area. If you need the old behavior use alwaysStopScrollBubble.
    (@cmdcolin, pull #1373)

Bug fixes

  • Fixed a long standing issue with BigWig files not accessing the
    lowest summary zoom level (e.g. the first one after unzoomed).
    (@cmdcolin, issue #1359)

  • Fixed a bug with using the scoreType: maxScore configuration on
    Wiggle tracks failing at non-summary zoom levels. Thanks to
    @patrickcng90 for reporting

  • Fixed a bug with name regularizing that particularly affected CRAM
    on mitochondrial chromosomes. Thanks to @sachalau for patience and
    sample data for debugging this issue! (issue #1367, @cmdcolin)

  • Fixed issue with GFF3/Tabix types colliding their attribute names
    with the field e.g. if start=0 was in column 9. Thanks to
    @loraine-gueguen for reporting (issue #1364).

  • Fixed an issue with NeatHTMLFeatures when zoomed out. Thanks to
    @abretaud for the implementation and fix (pull #1368).

  • Restored ability to access widest zoom level from bigwig. Thanks
    to @lukaw3d for noticing and debugging (issue #1375, @cmdcolin)

  • Fixed some minor parsing of 'b' type data series in CRAM files,
    which happens when CRAM is not using reference based compression
    so it is uncommon (@cmdcolin)

  • Added some more checks for track types for combination tracks (issue
    #1361)

Assets 6
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