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@GenomicMedLab

The Wagner/Chaudhari Laboratories at the Institute for Genomic Medicine

The Wagner and Chaudhari Laboratories develop methods and tools for translating genomic variation in patients to clinical actionability

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  1. cool-seq-tool cool-seq-tool Public

    Python 4

  2. variation-normalizer-manuscript variation-normalizer-manuscript Public

    Issue tracker for Variation Normalizer manuscript work

    Jupyter Notebook 2

  3. agct agct Public

    Another Genome Conversion Tool: Python frontend to Rust chainfile crate

    Python 2

  4. preferredlist preferredlist Public

    Lists of genes and hotspots for filter pass-through inspection in variant interpretation

    1

  5. r-dgidb r-dgidb Public

    In-progress R wrapper for DGIdb

    R 1

  6. regbot regbot Public

    Python 1

Repositories

Showing 10 of 29 repositories
  • dgipy Public

    Python client for fast access to the Drug-Gene Interaction Database (DGIDb)

    GenomicMedLab/dgipy’s past year of commit activity
    Python 0 MIT 0 13 7 Updated Nov 1, 2024
  • wags-tails Public

    Data acquisition tools for Wagnerds

    GenomicMedLab/wags-tails’s past year of commit activity
    Python 0 MIT 0 13 7 Updated Oct 31, 2024
  • software-templates Public

    Cookiecutter templates for lab software projects

    GenomicMedLab/software-templates’s past year of commit activity
    Python 0 MIT 0 14 0 Updated Oct 31, 2024
  • genomicmedlab.org Public

    Building a lab website

    GenomicMedLab/genomicmedlab.org’s past year of commit activity
    HTML 0 Apache-2.0 0 0 0 Updated Oct 30, 2024
  • cool-seq-tool Public
    GenomicMedLab/cool-seq-tool’s past year of commit activity
    Python 4 MIT 0 36 0 Updated Oct 30, 2024
  • regbot Public
    GenomicMedLab/regbot’s past year of commit activity
    Python 1 MIT 0 3 0 Updated Oct 29, 2024
  • variation-normalizer-manuscript Public

    Issue tracker for Variation Normalizer manuscript work

    GenomicMedLab/variation-normalizer-manuscript’s past year of commit activity
    Jupyter Notebook 2 MIT 0 4 0 Updated Oct 25, 2024
  • r-dgidb Public

    In-progress R wrapper for DGIdb

    GenomicMedLab/r-dgidb’s past year of commit activity
    R 1 0 3 0 Updated Oct 21, 2024
  • gregor Public

    Handle GREGoR Consortium tasks/code

    GenomicMedLab/gregor’s past year of commit activity
    Python 0 MIT 0 10 0 Updated Oct 16, 2024
  • seqrepo-rest-service Public Forked from biocommons/seqrepo-rest-service

    OpenAPI-based REST interface to biological sequences and sequence metadata

    GenomicMedLab/seqrepo-rest-service’s past year of commit activity
    Python 0 Apache-2.0 6 0 0 Updated Sep 25, 2024
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