This repository contains R code used for data analysis of the survey data generated for the Probst, Hug, Hatzenpichler, Moraru, Soares, Heyder & Meyer (2024) manuscript.
File list & description:
- NCBI_SRA_overtime: Analyis of available SRA data and model fitting to extrapolate data numbers by 2030 - Figure S1 of the manuscript (RMarkdown and HTML)
- response_analysis_090224: Analysis of survey data - Figures S2-10 and Tables S1-4
R environment used to run both RMD files:
> sessionInfo()
R version 4.3.1 (2023-06-16)
Platform: aarch64-apple-darwin20 (64-bit)
Running under: macOS Sonoma 14.1.2
Matrix products: default
BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/lib/libRlapack.dylib; LAPACK version 3.11.0
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
time zone: Europe/Berlin
tzcode source: internal
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] patchwork_1.1.3 kableExtra_1.3.4 ggsankey_0.0.99999 lubridate_1.9.3
[5] forcats_1.0.0 stringr_1.5.1 dplyr_1.1.4 purrr_1.0.2
[9] readr_2.1.4 tidyr_1.3.1 tibble_3.2.1 ggplot2_3.4.4
[13] tidyverse_2.0.0
loaded via a namespace (and not attached):
[1] utf8_1.2.4 generics_0.1.3 xml2_1.3.6 stringi_1.8.3
[5] hms_1.1.3 digest_0.6.33 magrittr_2.0.3 evaluate_0.23
[9] grid_4.3.1 timechange_0.2.0 fastmap_1.1.1 jsonlite_1.8.8
[13] processx_3.8.3 chromote_0.1.2 ps_1.7.5 promises_1.2.1
[17] httr_1.4.7 rvest_1.0.4 fansi_1.0.6 viridisLite_0.4.2
[21] scales_1.3.0 cli_3.6.2 rlang_1.1.3 munsell_0.5.0
[25] withr_3.0.0 yaml_2.3.8 tools_4.3.1 tzdb_0.4.0
[29] colorspace_2.1-0 webshot_0.5.5 vctrs_0.6.5 R6_2.5.1
[33] lifecycle_1.0.4 pkgconfig_2.0.3 pillar_1.9.0 later_1.3.2
[37] gtable_0.3.4 glue_1.7.0 Rcpp_1.0.11 systemfonts_1.0.5
[41] xfun_0.41 tidyselect_1.2.0 rstudioapi_0.15.0 knitr_1.45
[45] websocket_1.4.1 htmltools_0.5.7 svglite_2.1.3 rmarkdown_2.25
[49] compiler_4.3.1