Include CSV in commit #91
Workflow file for this run
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| name: Image build and test | |
| env: | |
| IMAGE_NAME: geoscienceaustralia/dea-intertidal | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - tests | |
| paths: | |
| - 'intertidal/**' | |
| - 'data/**' | |
| - 'tests/**' | |
| - '.github/workflows/dea-intertidal-image.yml' | |
| - 'Dockerfile' | |
| - 'requirements.in' | |
| - 'setup.py' | |
| - 'docker-compose.yml' | |
| - 'codecov.yaml' | |
| release: | |
| types: [created, edited, published] | |
| permissions: | |
| id-token: write # This is required for requesting the JWT | |
| contents: write # This is required for actions/checkout | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Build DEA Intertidal image | |
| timeout-minutes: 20 | |
| shell: bash | |
| run: | | |
| docker-compose build | |
| - name: Run tests | |
| run: | | |
| # Download tide modelling files and unzip | |
| # TODO: Replace with S3 sync from dea-non-public-data | |
| wget --no-verbose https://www.dropbox.com/s/uemd8ib2vfw5nad/tide_models.zip?dl=1 -O tide_models.zip | |
| unzip -q tide_models.zip | |
| # Run integration tests using Docker | |
| docker compose run dea_intertidal pytest -v --cov=intertidal --cov-report=xml tests | |
| # Copy out validation outputs produced by the integration tests and place them | |
| # in correct output locations so they can be committed back into the repository | |
| cp ./artifacts/validation.jpg ./tests/validation.jpg | |
| cp ./artifacts/validation.csv ./tests/validation.csv | |
| # - name: Setup upterm session | |
| # uses: lhotari/action-upterm@v1 | |
| # Commit validation results produced by integration tests back into repo | |
| - uses: stefanzweifel/git-auto-commit-action@v4 | |
| with: | |
| commit_message: Automatically update integration test validation results | |
| file_pattern: 'tests/validation.jpg tests/validation.csv' | |
| # Add output data to Actions artifact so it can be downloaded | |
| - uses: actions/upload-artifact@v3 | |
| with: | |
| name: validation_plot | |
| path: ./artifacts/validation.jpg | |
| - name: Upload coverage reports to Codecov | |
| uses: codecov/codecov-action@v3 | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| # push_ecr: | |
| # needs: [test] | |
| # runs-on: ubuntu-latest | |
| # steps: | |
| # - name: Checkout code | |
| # uses: actions/checkout@v3 | |
| # - name: Configure AWS credentials | |
| # uses: aws-actions/configure-aws-credentials@v1 | |
| # with: | |
| # role-to-assume: arn:aws:iam::538673716275:role/github-actions-role | |
| # aws-region: ap-southeast-2 | |
| # - name: Get tag for this build if it exists | |
| # if: github.event_name == 'release' | |
| # run: | | |
| # echo "RELEASE=${GITHUB_REF/refs\/tags\/}" >> $GITHUB_ENV | |
| # - name: Push release image to ECR | |
| # uses: whoan/docker-build-with-cache-action@master | |
| # if: github.event_name == 'release' | |
| # with: | |
| # registry: 538673716275.dkr.ecr.ap-southeast-2.amazonaws.com | |
| # image_name: ${{ env.IMAGE_NAME }} | |
| # image_tag: ${{ env.RELEASE }} | |
| # - name: Get git commit hash for push to main | |
| # if: github.event_name != 'release' | |
| # run: | | |
| # echo "TAG=dev$(git rev-parse --short HEAD)" \ | |
| # >> $GITHUB_ENV | |
| # - name: Push unstable image to ECR | |
| # uses: whoan/docker-build-with-cache-action@master | |
| # if: github.event_name != 'release' | |
| # with: | |
| # registry: 538673716275.dkr.ecr.ap-southeast-2.amazonaws.com | |
| # image_name: ${{ env.IMAGE_NAME }} | |
| # image_tag: latest,${{ env.TAG }} |