9.17_vegenitte_3

GilbertHan1011 · Sep 17, 2024 · fe439b1 · fe439b1
1 parent 2bf4c6e
commit fe439b1
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Showing 2 changed files with 4 additions and 6 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -29,7 +29,10 @@ Imports:
 Suggests: 
     knitr,
     rmarkdown,
-    testthat
+    testthat,
+    TxDb.Mmusculus.UCSC.mm10.knownGene,
+    org.Mm.eg.db,
+    GenomicFeatures
 Collate: class.R AllGenerics.R getset.R
         methods.R annotate.R distance.R formatConverter.R 
         linkSet-package.R GRange_method.R test_helper.R

diff --git a/vignettes/hic_workthrough.Rmd b/vignettes/hic_workthrough.Rmd
@@ -30,11 +30,6 @@ We highly recommend you to use custom data instead of the example data provided
 
 
 ```{r setup}
-if (!require("BiocManager", quietly = TRUE))
-    install.packages("BiocManager")
-
-if (!require(c("TxDb.Mmusculus.UCSC.mm10.knownGene","org.Mm.eg.db"), quietly = TRUE))
-    BiocManager::install(c("TxDb.Mmusculus.UCSC.mm10.knownGene","org.Mm.eg.db"))
 suppressPackageStartupMessages({
   library(linkSet)
   library(TxDb.Mmusculus.UCSC.mm10.knownGene)