Generate OWL file

HUPO-PSI · Mar 17, 2023 · c284e71 · c284e71
1 parent 4c2ab79
commit c284e71
Showing 1 changed file with 166 additions and 5 deletions.
diff --git a/psi-ms.owl b/psi-ms.owl
@@ -34,16 +34,16 @@
      xmlns:ncbitaxon="http://purl.obolibrary.org/obo/ncbitaxon#"
      xmlns:caloha-reqs-vetted="http://purl.obolibrary.org/obo/caloha-reqs-vetted#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/ms.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/ms/4.1.114/ms.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/ms/4.1.115/ms.owl"/>
         <owl:imports rdf:resource="http://purl.obolibrary.org/obo/pato.owl"/>
         <owl:imports rdf:resource="http://purl.obolibrary.org/obo/stato.owl"/>
         <oboInOwl:NamespaceIdRule rdf:datatype="http://www.w3.org/2001/XMLSchema#string">* MS:$sequence(7,0,9999999)$</oboInOwl:NamespaceIdRule>
         <oboInOwl:NamespaceIdRule rdf:datatype="http://www.w3.org/2001/XMLSchema#string">* PEFF:$sequence(7,0,9999999)$</oboInOwl:NamespaceIdRule>
         <oboInOwl:auto-generated-by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">OBO-Edit 2.3.1</oboInOwl:auto-generated-by>
-        <oboInOwl:date rdf:datatype="http://www.w3.org/2001/XMLSchema#string">17:02:2023 11:30</oboInOwl:date>
+        <oboInOwl:date rdf:datatype="http://www.w3.org/2001/XMLSchema#string">16:03:2023 11:30</oboInOwl:date>
         <oboInOwl:default-namespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MS</oboInOwl:default-namespace>
         <oboInOwl:hasOBOFormatVersion rdf:datatype="http://www.w3.org/2001/XMLSchema#string">1.2</oboInOwl:hasOBOFormatVersion>
-        <oboInOwl:saved-by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Joshua Klein</oboInOwl:saved-by>
+        <oboInOwl:saved-by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Eric Deutsch</oboInOwl:saved-by>
         <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">For any queries contact [email protected]</rdfs:comment>
         <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">This work is licensed under the Creative Commons Attribution 4.0 International (CC BY 4.0) license.</rdfs:comment>
         <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">To view a copy of this license, visit https://creativecommons.org/licenses/by/4.0/ or send a letter to Creative Commons, 444 Castro Street, Suite 900, Mountain View, California, 94041, USA.</rdfs:comment>
@@ -66759,15 +66759,21 @@
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/MS_1003213">
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/MS_1000524"/>
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/MS_1001954"/>
-        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Specific aspect of a mass spectrometer method by which mass ranges are selected and possibly dissociated.</obo:IAO_0000115>
+        <rdfs:subClassOf>
+            <owl:Restriction>
+                <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/ms#part_of"/>
+                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/MS_1003350"/>
+            </owl:Restriction>
+        </rdfs:subClassOf>
+        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Mode of running a mass spectrometer method by which mass ranges are selected and possibly dissociated.</obo:IAO_0000115>
         <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MS</oboInOwl:hasOBONamespace>
         <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MS:1003213</oboInOwl:id>
         <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">mass spectrometry acquisition method</rdfs:label>
     </owl:Class>
     <owl:Axiom>
         <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/MS_1003213"/>
         <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
-        <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Specific aspect of a mass spectrometer method by which mass ranges are selected and possibly dissociated.</owl:annotatedTarget>
+        <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Mode of running a mass spectrometer method by which mass ranges are selected and possibly dissociated.</owl:annotatedTarget>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PSI:MS</oboInOwl:hasDbXref>
     </owl:Axiom>
 
@@ -66777,6 +66783,12 @@
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/MS_1003214">
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/MS_1001458"/>
+        <rdfs:subClassOf>
+            <owl:Restriction>
+                <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/ms#part_of"/>
+                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/MS_1003213"/>
+            </owl:Restriction>
+        </rdfs:subClassOf>
         <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Specific aspect of a mass spectrometer method by which mass ranges are selected and possibly dissociated.</obo:IAO_0000115>
         <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MS</oboInOwl:hasOBONamespace>
         <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MS:1003214</oboInOwl:id>
@@ -69641,6 +69653,155 @@
 
 
 
+    <!-- http://purl.obolibrary.org/obo/MS_1003348 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/MS_1003348">
+        <rdfs:subClassOf>
+            <owl:Restriction>
+                <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/ms#part_of"/>
+                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/MS_0000000"/>
+            </owl:Restriction>
+        </rdfs:subClassOf>
+        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">large-scale study of proteins and proteomes.</obo:IAO_0000115>
+        <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MS</oboInOwl:hasOBONamespace>
+        <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MS:1003348</oboInOwl:id>
+        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">proteomics</rdfs:label>
+    </owl:Class>
+    <owl:Axiom>
+        <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/MS_1003348"/>
+        <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
+        <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">large-scale study of proteins and proteomes.</owl:annotatedTarget>
+        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PSI:MS</oboInOwl:hasDbXref>
+    </owl:Axiom>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/MS_1003349 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/MS_1003349">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/MS_1003348"/>
+        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">large-scale study of proteins and proteomes via the use of affinity reagents.</obo:IAO_0000115>
+        <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MS</oboInOwl:hasOBONamespace>
+        <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MS:1003349</oboInOwl:id>
+        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">affinity proteomics</rdfs:label>
+    </owl:Class>
+    <owl:Axiom>
+        <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/MS_1003349"/>
+        <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
+        <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">large-scale study of proteins and proteomes via the use of affinity reagents.</owl:annotatedTarget>
+        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PSI:MS</oboInOwl:hasDbXref>
+    </owl:Axiom>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/MS_1003350 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/MS_1003350">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/MS_1003348"/>
+        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">large-scale study of proteins and proteomes via the use of mass spectrometers to measure the masses and abundances of charged proteins or protein fragments.</obo:IAO_0000115>
+        <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MS</oboInOwl:hasOBONamespace>
+        <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MS:1003350</oboInOwl:id>
+        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">mass spectrometry proteomics</rdfs:label>
+    </owl:Class>
+    <owl:Axiom>
+        <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/MS_1003350"/>
+        <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
+        <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">large-scale study of proteins and proteomes via the use of mass spectrometers to measure the masses and abundances of charged proteins or protein fragments.</owl:annotatedTarget>
+        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PSI:MS</oboInOwl:hasDbXref>
+    </owl:Axiom>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/MS_1003351 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/MS_1003351">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/MS_1003350"/>
+        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">study of proteins via the use of mass spectrometers to measure the masses and abundances of charged intact proteins.</obo:IAO_0000115>
+        <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MS</oboInOwl:hasOBONamespace>
+        <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MS:1003351</oboInOwl:id>
+        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">top-down proteomics</rdfs:label>
+    </owl:Class>
+    <owl:Axiom>
+        <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/MS_1003351"/>
+        <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
+        <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">study of proteins via the use of mass spectrometers to measure the masses and abundances of charged intact proteins.</owl:annotatedTarget>
+        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PSI:MS</oboInOwl:hasDbXref>
+    </owl:Axiom>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/MS_1003352 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/MS_1003352">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/MS_1003351"/>
+        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">study of proteins via the use of mass spectrometers to measure the masses and abundances of charged intact folded proteins.</obo:IAO_0000115>
+        <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MS</oboInOwl:hasOBONamespace>
+        <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MS:1003352</oboInOwl:id>
+        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">native top-down proteomics</rdfs:label>
+    </owl:Class>
+    <owl:Axiom>
+        <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/MS_1003352"/>
+        <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
+        <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">study of proteins via the use of mass spectrometers to measure the masses and abundances of charged intact folded proteins.</owl:annotatedTarget>
+        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PSI:MS</oboInOwl:hasDbXref>
+    </owl:Axiom>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/MS_1003353 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/MS_1003353">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/MS_1003351"/>
+        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">study of proteins via the use of mass spectrometers to measure the masses and abundances of charged intact denatured proteins.</obo:IAO_0000115>
+        <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MS</oboInOwl:hasOBONamespace>
+        <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MS:1003353</oboInOwl:id>
+        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">non-native top-down proteomics</rdfs:label>
+    </owl:Class>
+    <owl:Axiom>
+        <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/MS_1003353"/>
+        <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
+        <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">study of proteins via the use of mass spectrometers to measure the masses and abundances of charged intact denatured proteins.</owl:annotatedTarget>
+        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PSI:MS</oboInOwl:hasDbXref>
+    </owl:Axiom>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/MS_1003354 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/MS_1003354">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/MS_1003350"/>
+        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">study of proteins via the use of mass spectrometers to measure the masses and abundances of large protein fragments after partial digestion of denatured proteins.</obo:IAO_0000115>
+        <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MS</oboInOwl:hasOBONamespace>
+        <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MS:1003354</oboInOwl:id>
+        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">middle-down proteomics</rdfs:label>
+    </owl:Class>
+    <owl:Axiom>
+        <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/MS_1003354"/>
+        <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
+        <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">study of proteins via the use of mass spectrometers to measure the masses and abundances of large protein fragments after partial digestion of denatured proteins.</owl:annotatedTarget>
+        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PSI:MS</oboInOwl:hasDbXref>
+    </owl:Axiom>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/MS_1003355 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/MS_1003355">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/MS_1003350"/>
+        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">study of proteins via the use of mass spectrometers to measure the masses and abundances of peptides after complete digestion of denatured proteins.</obo:IAO_0000115>
+        <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MS</oboInOwl:hasOBONamespace>
+        <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MS:1003355</oboInOwl:id>
+        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">bottom-up proteomics</rdfs:label>
+    </owl:Class>
+    <owl:Axiom>
+        <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/MS_1003355"/>
+        <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
+        <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">study of proteins via the use of mass spectrometers to measure the masses and abundances of peptides after complete digestion of denatured proteins.</owl:annotatedTarget>
+        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PSI:MS</oboInOwl:hasDbXref>
+    </owl:Axiom>
+
+
+
     <!-- http://purl.obolibrary.org/obo/MS_4000000 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/MS_4000000">