1.11.1

What's Changed

• fix: do not make Solver private by @JoshLoecker in #191
• Add boundary column by @JoshLoecker in #196
• Write zFPKM Graphs by @JoshLoecker in #197
• Modify column names by @JoshLoecker in #198
• Set Troppo Source by @JoshLoecker in #202
• chore(deps): bump astral-sh/ruff-action from 1 to 2 by @dependabot in #201
• chore(deps): bump astral-sh/setup-uv from 3 to 4 by @dependabot in #200
• hotfix: allow setting solvers through troppo; update actions by @JoshLoecker in #203

Full Changelog: 1.11.0...1.11.1

1.11.0

What's Changed

• Bump docker/build-push-action from 5 to 6 by @dependabot in #183
• Purge R code by @JoshLoecker in #187

Full Changelog: v1.10.0-main...1.11.0

v1.10.0-main

What's Changed

• Introduce package by @JoshLoecker in #184
• Bump mamba-org/setup-micromamba from 1 to 2 by @dependabot in #185

Full Changelog: v1.9.0-master...v1.10.0-main

v1.9.0

What's Changed

• Bump actions/setup-python from 4 to 5 by @dependabot in #170
• Delete .github/workflows/type_checking.yml by @JoshLoecker in #171
• Incorporate Microarray by @JoshLoecker in #172
• Remove type checking badge by @JoshLoecker in #173
• Color Change by @JoshLoecker in #174
• Fix Configs() usage throughout project by @JoshLoecker in #176
• Move from multi_bioservices to fast_bioservices by @JoshLoecker in #177
• Expose additional functionality by @JoshLoecker in #178
• Consolidate usage of command line arguments by @JoshLoecker in #179
• Fix environment by @JoshLoecker in #180
• Use fast_bioservices instead of multi_bioservices by @JoshLoecker in #181

Full Changelog: v1.8.1-master...v1.9.0-master

Remove Docker Multi-stage Builds

What's Changed

• Remove Multistage Builds by @JoshLoecker in #168

Full Changelog: 1.8.0-master...v1.8.1-master

Fix Model Building

What's Changed

• Use context name for boundary and force reactions instead of "default" by @JoshLoecker in #161
• Add citation by @JoshLoecker in #163
• Update environment information by @JoshLoecker in #164
• General Updates by @JoshLoecker in #165
• Remove "docs" as it is now located in the "docs" branch by @JoshLoecker in #166
• Model Checking by @JoshLoecker in #167

Full Changelog: v1.7.1-master...1.8.0-master

Remove ARM building

No hardware is available to test errors occurring during the build process

Build for AMD and ARM

v0.0.28-dockerfile

Build docker container for ARM and AMD

Split actions into two

v0.0.27-dockerfile

Unable to have "uses" and "run" in the same step, split into two

Use a single step for cleaning jupyter notebook cleaning

v0.0.26-dockerfile

Execute a single action for jupyter notebook output cleaning