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HighlanderLab

Software for the management and improvement of populations using data science, genetics, and breeding

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  1. jbancic_alphasimr_plants jbancic_alphasimr_plants Public

    Plant breeding simulations with AlphaSimR

    HTML 14 9

  2. jbancic_GEIsim jbancic_GEIsim Public

    This repository contains examples of code for simulating genotype by environment interaction

    R 4 1

  3. EUCARPIA2025BiometricsPlantBreeding EUCARPIA2025BiometricsPlantBreeding Public

    This is a repository hosting public information about the EUCARPIA 2025 Biometrics in Plant Breeding in Edinburgh 17-19th September 2025 + Satellite workshop 15-16th September

    4

  4. tree_seq_pipeline tree_seq_pipeline Public

    Pipeline to infer tree sequences with different datasets

    Python 3 7

  5. gmafrafortuna_mtdna_breed gmafrafortuna_mtdna_breed Public

    Accounting for nuclear - and mito-genome in dairy cattle breeding: a simulation study

    R 2

  6. SIMplyBee SIMplyBee Public

    SIMplyBee R package extends AlphaSimR for simulating honeybee populations and breeding programmes

    R 2 6

Repositories

Showing 10 of 54 repositories
  • RandPedigreePCA Public

    Principal Component Analysis of Pedigree Relationship Matrix via Randomized SVD

    HighlanderLab/RandPedigreePCA’s past year of commit activity
    Jupyter Notebook 0 1 3 0 Updated Dec 27, 2024
  • AlphaPart Public Forked from AlphaGenes/AlphaPart

    AlphaPart implements a method for partitioning genetic trends to quantify the sources of genetic gain in breeding programmes

    HighlanderLab/AlphaPart’s past year of commit activity
    R 0 3 0 0 Updated Dec 21, 2024
  • SIMplyBee Public

    SIMplyBee R package extends AlphaSimR for simulating honeybee populations and breeding programmes

    HighlanderLab/SIMplyBee’s past year of commit activity
    R 2 6 65 0 Updated Dec 16, 2024
  • AlphaSimR Public Forked from gaynorr/AlphaSimR

    R package for breeding program simulations

    HighlanderLab/AlphaSimR’s past year of commit activity
    R 0 19 0 0 Updated Dec 15, 2024
  • EUCARPIA2025BiometricsPlantBreeding Public

    This is a repository hosting public information about the EUCARPIA 2025 Biometrics in Plant Breeding in Edinburgh 17-19th September 2025 + Satellite workshop 15-16th September

    HighlanderLab/EUCARPIA2025BiometricsPlantBreeding’s past year of commit activity
    4 0 0 0 Updated Nov 29, 2024
  • almondsim Public Forked from jorgemasgomez/almondsim

    Almond breeding simulations with AlphaSimR

    HighlanderLab/almondsim’s past year of commit activity
    R 0 9 0 0 Updated Nov 27, 2024
  • AlphaPeel Public Forked from AlphaGenes/AlphaPeel

    AlphaPeel: calling, phasing, and imputing genotype and sequence data in pedigrees

    HighlanderLab/AlphaPeel’s past year of commit activity
    Roff 0 MIT 11 0 0 Updated Nov 25, 2024
  • jbancic_alphasimr_plants Public

    Plant breeding simulations with AlphaSimR

    HighlanderLab/jbancic_alphasimr_plants’s past year of commit activity
    HTML 14 9 2 0 Updated Nov 25, 2024
  • AlphaFamImpute Public Forked from AlphaGenes/AlphaFamImpute
    HighlanderLab/AlphaFamImpute’s past year of commit activity
    Python 1 MIT 2 0 0 Updated Nov 15, 2024
  • AlphaImpute2 Public Forked from AlphaGenes/AlphaImpute2

    AlphaImpute2: pedigree- and population-based genotype imputation

    HighlanderLab/AlphaImpute2’s past year of commit activity
    Python 0 MIT 6 0 0 Updated Oct 29, 2024
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