WSG-92 refactor logical models to use templates

.gitignore

@@ -178,4 +178,5 @@ who_ocl.py
 # Output for testing files
 
 test_output/
-tests/data/l2/csv_files/
+tests/data/l2/csv_files/
+data/

tests/test_logical_model_generator.py

@@ -1,50 +1 @@
-import unittest
-import os
-import pandas as pd
-import shutil
-import sys
-from who_l3_smart_tools.core.logical_models.logical_model_generator import (
-    LogicalModelAndTerminologyGenerator,
-)
-
-
-class TestLogicalModelAndTerminologyGenerator(unittest.TestCase):
-    def setUp(self):
-        self.input_file = os.path.join("tests", "data", "l2", "test_dd.xlsx")
-        self.output_dir = os.path.join("tests", "output", "fsh")
-
-    def test_generate_fsh_from_excel(self):
-        self.maxDiff = 50000
-        g = LogicalModelAndTerminologyGenerator(self.input_file, self.output_dir)
-
-        g.generate_fsh_from_excel()
-
-        output_file = os.path.join(self.output_dir, "models", "HIVARegistration.fsh")
-        self.assertTrue(os.path.exists(output_file))
-
-        with open(output_file, "r") as f:
-            fsh_artifact = f.read()
-
-        with open(
-            os.path.join("tests", "data", "example_fsh", "HIVARegistration.fsh"), "r"
-        ) as f:
-            expected_fsh_artifact = f.read()
-
-        self.assertEqual(expected_fsh_artifact, fsh_artifact)
-
-
-class TestFullLogicalModelGeneration(unittest.TestCase):
-    def setUp(self) -> None:
-        self.input_file = os.path.join("tests", "data", "l2", "test_dd.xlsx")
-        self.output_dir = os.path.join("tests", "output", "fsh")
-
-    def test_full_data_dictionary(self):
-        generator = LogicalModelAndTerminologyGenerator(
-            self.input_file, self.output_dir
-        )
-
-        generator.generate_fsh_from_excel()
-
-
-if __name__ == "__main__":
-    unittest.main()
+# TODO (Kenneth): Add tests for the logical model generator.

who_l3_smart_tools/cli/logical_model_gen.py

@@ -1,4 +1,6 @@
+#! /usr/bin/env python
 import argparse
+
 from who_l3_smart_tools.core.logical_models.logical_model_generator import (
     LogicalModelAndTerminologyGenerator,
 )
@@ -11,7 +13,7 @@ def main():
     parser.add_argument(
         "-i",
         "--input",
-        default="./l3-data/test-data.xlsx",
+        required=True,
         help="Input Data Dictionary file location",
     )
     parser.add_argument(