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3.24.06 - Oceanus

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@albertmena albertmena released this 01 Oct 07:03
· 2 commits to release-3.24.06 since this release
35461aa

New programs

  • xtomo tigre reconstruction: This program provides a variety of algorithms to reconstruct tomogram from a set of tilt series
  • graph_max_cut: split volume program
  • tomo_simulate_tilt_series: simualtion of ts, tomograms and coordinates
  • Programs updated
  • Deep_center: interface simplified, calculate shift for particles
  • deep_misalignment_detection: update model
  • pdb_label_from_volume:Added CIF format support
  • resolution_monotomo: Fast subtomo extraction
  • resolution_monotomo: accelarating monotomo with float
  • tomogram_reconstruction: tigre reconstruction added
  • tomo_extract_subtomograms: solving some bugs and enhancing performance
  • tomo_extract_particlestacks: solving some bugs and enhancing performance

Programs fixed

  • movie_estimate_gain: Initialize sigma values
  • resolution_localfilter: double not integer
  • movie_estimate_gain: Initialize sigma values
  • project_tomography: internal loop
  • pdb: Fixed PDB write function when no categories are present
  • fourier_filter:Fix WEDGE option in FourierFilter
  • resolution_pdb_bfactor:fix unaccounted column in res bfac pdb
  • fourier_filter: Fixing missing cone

Installation and user guide

  • Fixed PyXmipp installation
  • Update pythorch version on DLTK pyTorch enviroment
  • Fix DLTK installation
  • Removed force flag on conda installations (new conda version)

More Xmipp

  • API for collecting xmipp installation statistics
  • Local average added: Now the micrograph scissor annotates the local intensity value around the particles in the original micrographs.
  • Added support for half precision float micrographs
  • Wipe out memory ouptut in cuFFT
  • Deprecated deep_denoising
  • Fix for rare axis orderings in MRC/MAP files
  • Adding fixed extension to tom