Data upload metadatasheet #143
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LeaSeep
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Dec 19, 2023
…es now (#149) * highlighting possible, better venn. TODO: download table, and update packages (-ggVennDiagram, -UpSetR, +ggvenn, + ComplexUpset) * fixed small eroor in mapping, table download possible TODO:update packages (-ggVennDiagram, -UpSetR, +ggvenn, + ComplexUpset) * ensure "none" is really not doing anything (#140) * added p-values to single gene visualization. corrected intersection download. * Fix pca loadings update & dynamic PC selection(#141) * fix Loading behaviour * add brackets * shift ui element to allow dynamic PC-selection * Data upload metadatasheet (#143) * expand on data upload for visual inspection; fix on data upload with metadata sheet * fixed upload with metadatasheet * Added info for significance analysis, so LFC is correctly interpreted. * Added checks for workflow to pca and sample correlation. * Added function to SourceAll.R * Added logo again * Added workflow to volcano plot. * Added workflow to heatmap plot. * Added workflow to significance analysis and res_tmp/par_tmp. * Added workflow to enrichment analysis and res_tmp/par_tmp. * Fixed spelling * OA Workflow and res/par_tmp * Displaying mre information on sigAna table * Calculating log2Foldchanges, table very similar to DESeq Table * Added panel for volcano plot * added requested packages; update renv * update to trouble package reactome.db * only filter volcano wokrs, both to report and saving plots works. * Small change, s.t. legend is on the left side now. * Working for log transform now as well * Working for DESeq data as well. * Added gridExtra as dependencie. Needs to be put into renv as well. * Removed volcano plot panel. Do we need to rename "significance Analysis" or add an info pop up? * Fixed UpsetPlots * Set up Infrastructure for helpfiles * Made gridExtra as an import library. * not deleting png out of www * Apply suggestions from code review Co-authored-by: Lea Seep <[email protected]> * Revert "resolved merge issue" This reverts commit 680dec8, reversing changes made to a044abb. --------- Co-authored-by: PaulJonasJost <[email protected]> Co-authored-by: Paul Jonas Jost <[email protected]>
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fix of metadata sheet upload + data inspection also now possible