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Final docs brush #342

Merged
merged 8 commits into from
Sep 9, 2024
Merged

Final docs brush #342

merged 8 commits into from
Sep 9, 2024

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LeaSeep
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@LeaSeep LeaSeep commented Sep 9, 2024

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@PaulJonasJost PaulJonasJost left a comment

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Especially like the small icons, thanks :)

@@ -76,7 +86,10 @@ However, we can observe no separation of the groups along PC1 but rather by a co

To statistically test the two genes identified by their high loadings on PC1 and their difference in expression between the treatments, we can go to the Single Gene Visualisations tab. Here, single tests are performed and no multiple testing correction is done, allowing for a quick lookup of genes of interest. Checking Dusp1, Fos, Osm, and Ppbp, we obtain significant (p\<0.05) results for all but Osm, with Dusp1 and Fos being upregulated in HSD compared to NSD, while Ppbp is downregulated (Fig. D4A).

![Figure D4 Single gene visualisations. A Boxplots with statistical testing for Ppbp, Osm, Fos, and Dusp1 expression grouped by treatment. B Dotplot of Ppbp expression shown per individual.](/cOmicsArt/assets/images/Figure4.png)
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Specific reason to change the structure here? Not sure how the end result differs exactly but looks pretty much the same to me except Markdown -> HTML

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THe captions did not show up for me when the image was displayed..

@LeaSeep LeaSeep merged commit d78c4c7 into develop Sep 9, 2024
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@LeaSeep LeaSeep deleted the final_docs_brush branch September 9, 2024 14:59
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2 participants