docs: update for 1.3.0 release

CHANGELOG.md

@@ -5,6 +5,23 @@ All notable changes to this project will be documented in this file.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+## [1.3.0]
+
+### Added
+
+- Improved V&V interface
+  - Plugin support for protocols & checks
+  - Specification generation via `dpt validation spec`
+  - Generalized validation runner via `dpt validation run`
+  - Manual check interface via `dpt validation manual-checks`
+  - CLI interface implemented using [click](https://click.palletsprojects.com/en/8.1.x/)
+
+- Started to use logging via [loguru](https://github.com/Delgan/loguru)
+
+### Removed
+
+- Microarray specific protocols/checks (now implemented as plugins outside dp_tools)
+
 ## [1.2.1]
 
 ### Added
@@ -152,3 +169,4 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 [1.1.9]: https://github.com/j-81/dp_tools/compare/1.1.8...1.1.9
 [1.2.0]: https://github.com/j-81/dp_tools/compare/1.1.9...1.2.0
 [1.2.1]: https://github.com/j-81/dp_tools/compare/1.2.0...1.2.1
+[1.3.0]: https://github.com/j-81/dp_tools/compare/1.2.1...1.3.0

dp_tools/__init__.py

@@ -28,7 +28,7 @@
 
 #### Using pip
 
-> pip install git+https://github.com/J-81/dp_tools.git@1.2.1
+> pip install git+https://github.com/J-81/dp_tools.git@1.3.0
 
 ## CLI Commands
 
@@ -74,20 +74,20 @@
 ``` bash
 # First two lines tell Singularity to run the dp_tools container in the current working directory
 singularity exec --bind $(pwd):$(pwd) \\
-  docker://quay.io/j_81/dp_tools:1.2.1 \\
+  docker://quay.io/j_81/dp_tools:1.3.0 \\
   dpt-get-isa-archive --accession GLDS-168 # command we want to run
 ```
 
 #### Convert ISA Archive into bulkRNASeq Runsheet
 ``` bash
 # First two lines tell Singularity to run the dp_tools container in the current working directory
 singularity exec --bind $(pwd):$(pwd) \\
-  docker://quay.io/j_81/dp_tools:1.2.1 \\
+  docker://quay.io/j_81/dp_tools:1.3.0 \\
   dpt-isa-to-runsheet --accession GLDS-168 \\
                       --config-type bulkRNASeq \\
                       --config-version Latest \\
                       --isa-archive GLDS-168_metadata_GLDS-168-ISA.zip # command we want to run
 ```
 
 """
-__version__ = "1.2.1"
+__version__ = "1.3.0"

setup.py

@@ -12,7 +12,7 @@
 
 setup(
     name="dp_tools",
-    version="1.2.1",
+    version="1.3.0",
     description="Tooling for Data Processing Operations",
     author="Jonathan Oribello",
     author_email="[email protected]",