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#### Using pip | ||
> pip install git+https://github.com/J-81/[email protected].1 | ||
> pip install git+https://github.com/J-81/[email protected].2 | ||
## CLI Commands | ||
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``` bash | ||
# First two lines tell Singularity to run the dp_tools container in the current working directory | ||
singularity exec --bind $(pwd):$(pwd) \\ | ||
docker://quay.io/j_81/dp_tools:1.3.1 \\ | ||
docker://quay.io/j_81/dp_tools:1.3.2 \\ | ||
dpt-get-isa-archive --accession GLDS-168 # command we want to run | ||
``` | ||
#### Convert ISA Archive into bulkRNASeq Runsheet | ||
``` bash | ||
# First two lines tell Singularity to run the dp_tools container in the current working directory | ||
singularity exec --bind $(pwd):$(pwd) \\ | ||
docker://quay.io/j_81/dp_tools:1.3.1 \\ | ||
docker://quay.io/j_81/dp_tools:1.3.2 \\ | ||
dpt-isa-to-runsheet --accession GLDS-168 \\ | ||
--config-type bulkRNASeq \\ | ||
--config-version Latest \\ | ||
--isa-archive GLDS-168_metadata_GLDS-168-ISA.zip # command we want to run | ||
``` | ||
""" | ||
__version__ = "1.3.1" | ||
__version__ = "1.3.2" |
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setup( | ||
name="dp_tools", | ||
version="1.3.1", | ||
version="1.3.2", | ||
description="Tooling for Data Processing Operations", | ||
author="Jonathan Oribello", | ||
author_email="[email protected]", | ||
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