A repository of my homework from Gene 760: Genomic Methods for Genetic Analysis spring 2014.
Getting familiar with the Unix HPC environment.
Understanding SNPs and minor allele frequencies (MAF).
An introduction to aligning reads to the genome and calling variants.
An introduction to alighting reads to the transcriptome and calculating expression.
Understanding the role of SRF active binding in GM12878 and K562. Potential applications to cancer genomics.