Merge pull request #150 from Janelia-Trackathon-2023/iou-1-to-1 #416
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| name: CI | |
| on: | |
| push: | |
| branches: | |
| - main | |
| tags: | |
| - "v*" | |
| pull_request: | |
| workflow_dispatch: | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| # check-manifest: | |
| # runs-on: ubuntu-latest | |
| # steps: | |
| # - uses: actions/checkout@v4 | |
| # - run: pipx run check-manifest | |
| test: | |
| name: ${{ matrix.platform }} (${{ matrix.python-version }}) | |
| runs-on: ${{ matrix.platform }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.9", "3.10", "3.11"] | |
| platform: [ubuntu-latest, macos-latest, windows-latest] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache-dependency-path: "pyproject.toml" | |
| cache: "pip" | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install -U pip | |
| python -m pip install -e .[test] | |
| - name: Test | |
| run: pytest --color=yes --cov --cov-report=xml --cov-report=term-missing | |
| - name: Coverage | |
| uses: codecov/codecov-action@v4 | |
| benchmark: | |
| name: Benchmark | |
| runs-on: ubuntu-latest | |
| if: github.event_name == 'pull_request' | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 50 # this is to make sure we obtain the target base commit | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.11 | |
| cache-dependency-path: "pyproject.toml" | |
| cache: "pip" | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install -U pip | |
| python -m pip install -e .[test] | |
| python -m pip install tabulate | |
| - name: Retrieve cached baseline if available | |
| uses: actions/cache/restore@v4 | |
| id: cache | |
| with: | |
| path: baseline.json | |
| key: ${{ github.event.pull_request.base.sha }} | |
| - name: Run baseline benchmark if not in cache | |
| if: steps.cache.outputs.cache-hit != 'true' | |
| run: | | |
| git checkout ${{ github.event.pull_request.base.sha }} | |
| pytest tests/bench.py --benchmark-json baseline.json | |
| - name: Cache baseline results | |
| uses: actions/cache/save@v4 | |
| if: steps.cache.outputs.cache-hit != 'true' | |
| with: | |
| path: baseline.json | |
| key: ${{ github.event.pull_request.base.sha }} | |
| - name: Run benchmark on PR head commit | |
| run: | | |
| git checkout ${{ github.event.pull_request.head.sha }} | |
| pytest tests/bench.py --benchmark-json pr.json | |
| - name: Generate report | |
| run: python .github/workflows/benchmark-pr.py baseline.json pr.json report.md | |
| - name: Comment on commit with report for non-forks | |
| uses: peter-evans/commit-comment@v3 | |
| if: github.event.pull_request.head.repo.fork == false | |
| with: | |
| body-path: report.md | |
| deploy: | |
| name: Deploy | |
| needs: test | |
| if: success() && startsWith(github.ref, 'refs/tags/') | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.x" | |
| - name: install | |
| run: | | |
| git tag | |
| pip install -U pip build twine | |
| python -m build | |
| twine check dist/* | |
| ls -lh dist | |
| - name: Build and publish | |
| run: twine upload dist/* | |
| env: | |
| TWINE_USERNAME: __token__ | |
| TWINE_PASSWORD: ${{ secrets.TWINE_API_KEY }} | |
| - uses: softprops/action-gh-release@v2 | |
| with: | |
| generate_release_notes: true |