python-ci.yml

name: Python CI

on:
  push:
    branches: [ main ]

jobs:
  build:
    runs-on: ubuntu-latest
    strategy:
      matrix:
        python-version: ["3.10"]
    steps:
    - uses: actions/checkout@v4
    - name: Set up Python ${{ matrix.python-version }}
      uses: conda-incubator/setup-miniconda@v3.0.4
      with:
        miniforge-version: latest
        use-mamba: true
        python-version: ${{ matrix.python-version }}
        channel-priority: strict
    - name: Install dependencies
      run: |
        mamba env update --file environment.yml --prune
        which python
        pip list
        mamba list
    - name: Test with pytest
      run: |
        python -m pytest --cov=zarrcade --cov-report=html --cov-report=term -W ignore::DeprecationWarning --html=htmlcov/test_results.html
    - name: Upload pytest and coverage results
      uses: actions/upload-artifact@v4
      if: always()
      with:
        name: testcoverage-${{ matrix.os }}-py${{ matrix.python-version }}
        path: |
          htmlcov/*