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@JinmiaoChenLab

Jinmiao Chen's Lab

single cell and AI for precision immunology

Popular repositories Loading

  1. GraphST GraphST Public

    Python 101 14

  2. Batch-effect-removal-benchmarking Batch-effect-removal-benchmarking Public

    A benchmark of batch-effect correction methods for single-cell RNA sequencing data

    Jupyter Notebook 73 46

  3. cytofkit cytofkit Public

    cytofkit: an integrated flow/mass cytometry data analysis pipeline

    R 57 27

  4. ezSingleCell2 ezSingleCell2 Public

    R 52 7

  5. SEDR SEDR Public

    Python 49 10

  6. Rphenograph Rphenograph Public

    Rphenograph: R implementation of the PhenoGraph algorithm

    R 47 26

Repositories

Showing 10 of 36 repositories
  • stGUMI Public
    JinmiaoChenLab/stGUMI’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 23, 2025
  • SpaMosaic Public
    JinmiaoChenLab/SpaMosaic’s past year of commit activity
    Jupyter Notebook 0 MIT 1 0 0 Updated Dec 11, 2024
  • DISCOtoolkit_py Public

    Python version of DISCO toolkit

    JinmiaoChenLab/DISCOtoolkit_py’s past year of commit activity
    Python 12 1 2 0 Updated Nov 21, 2024
  • SEDR Public
    JinmiaoChenLab/SEDR’s past year of commit activity
    Python 49 MIT 10 5 0 Updated Nov 6, 2024
  • FastIntegration Public

    FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis

    JinmiaoChenLab/FastIntegration’s past year of commit activity
    R 23 4 2 0 Updated Oct 25, 2024
  • DISCOtoolkit Public
    JinmiaoChenLab/DISCOtoolkit’s past year of commit activity
    R 27 4 0 0 Updated Oct 24, 2024
  • SpatialGlue Public

    SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.

    JinmiaoChenLab/SpatialGlue’s past year of commit activity
    Python 46 AGPL-3.0 8 18 0 Updated Jun 24, 2024
  • SpatialGlue_tutorials Public

    The tutorial is to show how to apply SpatialGlue to integrate spatial multi-omics data to decipher tissue heterogeneity.

    JinmiaoChenLab/SpatialGlue_tutorials’s past year of commit activity
    Python 1 0 0 0 Updated Jun 22, 2024
  • SpatialGlue_3M Public

    Extended version of SpatialGlue for integration of spatial triplet modality data.

    JinmiaoChenLab/SpatialGlue_3M’s past year of commit activity
    Python 4 0 0 0 Updated Jun 22, 2024
  • NNI_brain_code Public
    JinmiaoChenLab/NNI_brain_code’s past year of commit activity
    R 1 0 0 0 Updated May 3, 2024
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