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@JinmiaoChenLab

Jinmiao Chen's Lab

single cell and AI for precision immunology

Popular repositories Loading

  1. GraphST GraphST Public

    Python 88 11

  2. Batch-effect-removal-benchmarking Batch-effect-removal-benchmarking Public

    A benchmark of batch-effect correction methods for single-cell RNA sequencing data

    Jupyter Notebook 70 45

  3. cytofkit cytofkit Public

    cytofkit: an integrated flow/mass cytometry data analysis pipeline

    R 57 27

  4. Rphenograph Rphenograph Public

    Rphenograph: R implementation of the PhenoGraph algorithm

    R 46 26

  5. SEDR SEDR Public

    Python 41 8

  6. SpatialGlue SpatialGlue Public

    SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.

    Python 39 5

Repositories

Showing 10 of 36 repositories
  • JinmiaoChenLab/SpaMosaic’s past year of commit activity
    Jupyter Notebook 0 MIT 1 0 0 Updated Oct 9, 2024
  • JinmiaoChenLab/DISCOtoolkit’s past year of commit activity
    R 21 2 0 0 Updated Aug 24, 2024
  • SpatialGlue Public

    SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.

    JinmiaoChenLab/SpatialGlue’s past year of commit activity
    Python 39 AGPL-3.0 5 13 0 Updated Jun 24, 2024
  • SpatialGlue_tutorials Public

    The tutorial is to show how to apply SpatialGlue to integrate spatial multi-omics data to decipher tissue heterogeneity.

    JinmiaoChenLab/SpatialGlue_tutorials’s past year of commit activity
    Python 1 0 0 0 Updated Jun 22, 2024
  • SpatialGlue_3M Public

    Extended version of SpatialGlue for integration of spatial triplet modality data.

    JinmiaoChenLab/SpatialGlue_3M’s past year of commit activity
    Python 4 0 0 0 Updated Jun 22, 2024
  • JinmiaoChenLab/NNI_brain_code’s past year of commit activity
    R 0 0 0 0 Updated May 3, 2024
  • scTM Public

    scTM: A package for topic modelling in transcriptomics data

    JinmiaoChenLab/scTM’s past year of commit activity
    Python 4 0 3 0 Updated May 1, 2024
  • GraphST Public
    JinmiaoChenLab/GraphST’s past year of commit activity
    Python 88 AGPL-3.0 11 31 1 Updated Mar 19, 2024
  • JinmiaoChenLab/SpatialGlue_notebook’s past year of commit activity
    Jupyter Notebook 4 0 2 0 Updated Mar 5, 2024
  • JinmiaoChenLab/ezSingleCell2’s past year of commit activity
    R 36 GPL-3.0 5 3 0 Updated Jan 2, 2024

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