-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathrequirements.txt
261 lines (261 loc) · 9.77 KB
/
requirements.txt
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
absl-py==2.0.0
adabelief-pytorch==0.2.1
aiofiles @ file:///croot/aiofiles_1683773582346/work
aiohttp==3.8.6
aiosignal==1.3.1
aiosqlite @ file:///croot/aiosqlite_1683773899903/work
anndata==0.10.3
annoy==1.17.3
anyio @ file:///tmp/build/80754af9/anyio_1644481695334/work/dist
appdirs==1.4.4
argon2-cffi @ file:///opt/conda/conda-bld/argon2-cffi_1645000214183/work
argon2-cffi-bindings @ file:///tmp/build/80754af9/argon2-cffi-bindings_1644553347904/work
array-api-compat==1.4
arrow==1.3.0
async-timeout==4.0.3
attrs @ file:///croot/attrs_1668696182826/work
Babel @ file:///croot/babel_1671781930836/work
backcall @ file:///home/ktietz/src/ci/backcall_1611930011877/work
beautifulsoup4 @ file:///croot/beautifulsoup4-split_1681493039619/work
bleach @ file:///opt/conda/conda-bld/bleach_1641577558959/work
bokeh==3.3.0
brotlipy==0.7.0
cachetools==5.3.2
captum==0.6.0
certifi==2023.7.22
cffi @ file:///tmp/abs_98z5h56wf8/croots/recipe/cffi_1659598650955/work
charset-normalizer @ file:///tmp/build/80754af9/charset-normalizer_1630003229654/work
chex==0.1.84
click==8.1.7
click-plugins==1.1.1
cligj==0.7.2
cloudpickle==3.0.0
colorama==0.4.6
colorcet==3.0.1
contourpy==1.2.0
cryptography @ file:///croot/cryptography_1677533068310/work
cucim==23.10.0
cuda-python==12.3.0
cudf-cu12==23.10.0
cugraph-cu12==23.10.0
cuml-cu12==23.10.0
cuproj-cu12==23.10.0
cuspatial-cu12==23.10.0
cuxfilter-cu12==23.10.0
cycler==0.12.1
dask==2023.9.2
dask-cuda==23.10.0
dask-cudf-cu12==23.10.0
datashader==0.16.0
debugpy @ file:///home/builder/ci_310/debugpy_1640789504635/work
decorator @ file:///opt/conda/conda-bld/decorator_1643638310831/work
defusedxml @ file:///tmp/build/80754af9/defusedxml_1615228127516/work
distributed==2023.9.2
dog-optimizer==1.0.3
entrypoints @ file:///tmp/build/80754af9/entrypoints_1649908313000/work
exceptiongroup==1.1.3
faiss==1.7.4
fastjsonschema @ file:///opt/conda/conda-bld/python-fastjsonschema_1661371079312/work
fastrlock==0.8.2
filelock==3.9.0
fiona==1.9.5
fonttools==4.44.0
fqdn==1.5.1
frozenlist==1.4.0
fsspec==2023.4.0
geopandas==0.14.0
h5py==3.10.0
holoviews==1.18.0
idna @ file:///croot/idna_1666125576474/work
igraph==0.10.8
imageio==2.32.0
importlib-metadata==6.8.0
ipykernel @ file:///home/builder/ci_310/ipykernel_1640812194801/work/dist/ipykernel-6.4.1-py3-none-any.whl
ipython @ file:///tmp/abs_94gruux8u8/croots/recipe/ipython_1659529858706/work
ipython-genutils @ file:///tmp/build/80754af9/ipython_genutils_1606773439826/work
ipywidgets @ file:///croot/ipywidgets_1679394798311/work
isoduration==20.11.0
jax==0.4.20
jaxlib==0.4.20+cuda12.cudnn89
jedi @ file:///tmp/build/80754af9/jedi_1644315229345/work
Jinja2 @ file:///croot/jinja2_1666908132255/work
joblib==1.3.2
json5 @ file:///tmp/build/80754af9/json5_1624432770122/work
jsonpointer==2.4
jsonschema @ file:///croot/jsonschema_1676558650973/work
jupyter @ file:///tmp/abs_33h4eoipez/croots/recipe/jupyter_1659349046347/work
jupyter-console @ file:///opt/conda/conda-bld/jupyter_console_1647002188872/work
jupyter-contrib-core @ file:///home/conda/feedstock_root/build_artifacts/jupyter_contrib_core_1657548529421/work
jupyter-events @ file:///croot/jupyter_events_1684268042853/work
jupyter-nbextensions-configurator @ file:///home/conda/feedstock_root/build_artifacts/jupyter_nbextensions_configurator_1670793770953/work
jupyter-ydoc @ file:///croot/jupyter_ydoc_1683747223142/work
jupyter_client @ file:///croot/jupyter_client_1676329080601/work
jupyter_core @ file:///croot/jupyter_core_1679906564508/work
jupyter_server @ file:///croot/jupyter_server_1686059464471/work
jupyter_server_fileid @ file:///croot/jupyter_server_fileid_1684273577568/work
jupyter_server_proxy==4.1.0
jupyter_server_terminals @ file:///croot/jupyter_server_terminals_1686870725608/work
jupyter_server_ydoc @ file:///croot/jupyter_server_ydoc_1686767404829/work
jupyterlab @ file:///croot/jupyterlab_1686179668131/work
jupyterlab-pygments @ file:///tmp/build/80754af9/jupyterlab_pygments_1601490720602/work
jupyterlab-widgets @ file:///croot/jupyterlab_widgets_1679055282532/work
jupyterlab_server @ file:///croot/jupyterlab_server_1680792501448/work
kiwisolver==1.4.5
lazy_loader==0.3
leidenalg==0.10.1
lime==0.2.0.1
linkify-it-py==2.0.2
llvmlite==0.40.1
locket==1.0.0
lxml @ file:///opt/conda/conda-bld/lxml_1657545139709/work
Markdown==3.5.1
markdown-it-py==3.0.0
MarkupSafe @ file:///opt/conda/conda-bld/markupsafe_1654597864307/work
matplotlib==3.8.1
matplotlib-inline @ file:///opt/conda/conda-bld/matplotlib-inline_1662014470464/work
mdit-py-plugins==0.4.0
mdurl==0.1.2
mistune @ file:///home/conda/feedstock_root/build_artifacts/mistune_1686313613819/work/dist
mkl-fft==1.3.1
mkl-random @ file:///home/builder/ci_310/mkl_random_1641843545607/work
mkl-service==2.4.0
ml-dtypes==0.3.1
mpmath==1.3.0
msgpack==1.0.7
multidict==6.0.4
multipledispatch==1.0.0
natsort==8.4.0
nbclassic @ file:///croot/nbclassic_1681756170010/work
nbclient @ file:///tmp/build/80754af9/nbclient_1650290238894/work
nbconvert @ file:///home/conda/feedstock_root/build_artifacts/nbconvert-meta_1687202153002/work
nbformat @ file:///croot/nbformat_1670352325207/work
nest-asyncio @ file:///croot/nest-asyncio_1672387112409/work
networkx==3.0
notebook @ file:///croot/notebook_1681756172480/work
notebook_shim @ file:///croot/notebook-shim_1668160579331/work
numba==0.57.1
numpy @ file:///croot/numpy_and_numpy_base_1682520569166/work
nvidia-cublas-cu12==12.3.2.9
nvidia-cuda-cupti-cu12==12.3.52
nvidia-cuda-nvcc-cu12==12.3.52
nvidia-cuda-nvrtc-cu12==12.3.52
nvidia-cuda-runtime-cu12==12.3.52
nvidia-cudnn-cu12==8.9.6.50
nvidia-cufft-cu12==11.0.11.19
nvidia-cusolver-cu12==11.5.3.52
nvidia-cusparse-cu12==12.1.3.153
nvidia-nccl-cu12==2.19.3
nvidia-nvjitlink-cu12==12.3.52
nvtx==0.2.8
opt-einsum==3.3.0
packaging @ file:///croot/packaging_1678965309396/work
pandas==1.5.3
pandocfilters @ file:///opt/conda/conda-bld/pandocfilters_1643405455980/work
panel==1.3.1
param==2.0.0
parso @ file:///opt/conda/conda-bld/parso_1641458642106/work
partd==1.4.1
patsy==0.5.3
pexpect @ file:///tmp/build/80754af9/pexpect_1605563209008/work
pickleshare @ file:///tmp/build/80754af9/pickleshare_1606932040724/work
Pillow==9.4.0
platformdirs @ file:///opt/conda/conda-bld/platformdirs_1662711380096/work
plottable==0.1.5
ply==3.11
pooch @ file:///tmp/build/80754af9/pooch_1623324770023/work
prometheus-client @ file:///tmp/abs_d3zeliano1/croots/recipe/prometheus_client_1659455100375/work
prompt-toolkit @ file:///croot/prompt-toolkit_1672387306916/work
protobuf==4.25.0
psutil==5.9.6
ptyprocess @ file:///tmp/build/80754af9/ptyprocess_1609355006118/work/dist/ptyprocess-0.7.0-py2.py3-none-any.whl
pyarrow==12.0.1
pycparser @ file:///tmp/build/80754af9/pycparser_1636541352034/work
pyct==0.5.0
Pygments @ file:///croot/pygments_1684279966437/work
pylibcugraph-cu12==23.10.0
pylibraft-cu12==23.10.0
pynndescent==0.5.10
pynvml==11.4.1
pyOpenSSL @ file:///croot/pyopenssl_1677607685877/work
pyparsing==3.1.1
pyproj==3.6.1
PyQt5-sip==12.11.0
pyrsistent @ file:///home/builder/ci_310/pyrsistent_1640807196327/work
PySocks @ file:///home/builder/ci_310/pysocks_1640793678128/work
python-dateutil @ file:///tmp/build/80754af9/python-dateutil_1626374649649/work
python-igraph==0.10.8
python-json-logger @ file:///croot/python-json-logger_1683823803357/work
pytorch_optimizer==2.12.0
pytz @ file:///croot/pytz_1671697431263/work
pyviz_comms==3.0.0
PyYAML @ file:///croot/pyyaml_1670514731622/work
pyzmq @ file:///home/conda/feedstock_root/build_artifacts/pyzmq_1666828497229/work
qtconsole @ file:///croot/qtconsole_1681394213385/work
QtPy @ file:///opt/conda/conda-bld/qtpy_1662014892439/work
raft-dask-cu12==23.10.0
requests @ file:///croot/requests_1682607517574/work
rfc3339-validator @ file:///croot/rfc3339-validator_1683077044675/work
rfc3986-validator @ file:///croot/rfc3986-validator_1683058983515/work
rich==13.6.0
rmm-cu12==23.10.0
scanpy==1.9.3
scib-metrics @ git+https://github.com/yoseflab/scib-metrics.git@34815bb6a7b12b42f81eaa52e65ed4ee15f5b9a4
scikit-image==0.22.0
scikit-learn==1.3.2
scikit-misc==0.3.0
scipy==1.10.1
seaborn==0.13.0
Send2Trash @ file:///tmp/build/80754af9/send2trash_1632406701022/work
session-info==1.0.0
shapely==2.0.2
simpervisor==1.0.0
sip @ file:///tmp/abs_44cd77b_pu/croots/recipe/sip_1659012365470/work
six @ file:///tmp/build/80754af9/six_1644875935023/work
sniffio @ file:///home/builder/ci_310/sniffio_1640794799774/work
sortedcontainers==2.4.0
soupsieve @ file:///croot/soupsieve_1680518478486/work
statsmodels==0.14.0
stdlib-list==0.9.0
sympy==1.12
tabulate==0.9.0
tbb==2021.10.0
tblib==3.0.0
terminado @ file:///croot/terminado_1671751832461/work
texttable==1.7.0
threadpoolctl==3.2.0
tifffile==2023.9.26
tinycss2 @ file:///croot/tinycss2_1668168815555/work
toml @ file:///tmp/build/80754af9/toml_1616166611790/work
tomli @ file:///opt/conda/conda-bld/tomli_1657175507142/work
toolz==0.12.0
torch==2.1.0+cu121
torch-scatter @ file:///usr/share/miniconda/envs/test/conda-bld/pytorch-scatter_1678969598125/work
torch-sparse @ file:///usr/share/miniconda/envs/test/conda-bld/pytorch-sparse_1679136244071/work
torchaudio==2.1.0+cu121
torchvision==0.16.0+cu121
tornado @ file:///opt/conda/conda-bld/tornado_1662061693373/work
tqdm==4.66.1
traitlets @ file:///croot/traitlets_1671143879854/work
treelite==3.9.1
treelite-runtime==3.9.1
triton==2.1.0
types-python-dateutil==2.8.19.14
typing_extensions @ file:///croot/typing_extensions_1686601443660/work
tzdata==2023.3
uc-micro-py==1.0.2
ucx-py-cu12==0.34.0
umap-learn==0.5.4
uri-template==1.3.0
urllib3 @ file:///croot/urllib3_1686163155763/work
wcwidth @ file:///Users/ktietz/demo/mc3/conda-bld/wcwidth_1629357192024/work
webcolors==1.13
webencodings==0.5.1
websocket-client @ file:///home/builder/ci_310/websocket-client_1640795866898/work
widgetsnbextension @ file:///croot/widgetsnbextension_1679313860248/work
xarray==2023.10.1
xyzservices==2023.10.1
y-py @ file:///croot/y-py_1683555143488/work
yarl==1.9.2
ypy-websocket @ file:///croot/ypy-websocket_1684171737040/work
zict==3.0.0
zipp==3.17.0