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environment.yml
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environment.yml
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name: long
channels:
- pytorch
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=main
- _openmp_mutex=5.1=1_gnu
- asttokens=2.0.5=pyhd3eb1b0_0
- attrs=21.4.0=pyhd3eb1b0_0
- backcall=0.2.0=pyhd3eb1b0_0
- beautifulsoup4=4.11.1=py38h06a4308_0
- blas=1.0=mkl
- bzip2=1.0.8=h7f98852_4
- ca-certificates=2022.4.26=h06a4308_0
- certifi=2022.5.18.1=py38h06a4308_0
- cffi=1.15.0=py38h7f8727e_0
- cudatoolkit=11.1.1=ha002fc5_10
- decorator=5.1.1=pyhd3eb1b0_0
- defusedxml=0.7.1=pyhd3eb1b0_0
- entrypoints=0.4=py38h06a4308_0
- executing=0.8.3=pyhd3eb1b0_0
- ffmpeg=4.3=hf484d3e_0
- freetype=2.10.4=h0708190_1
- gmp=6.2.1=h58526e2_0
- gnutls=3.6.13=h85f3911_1
- importlib_resources=5.2.0=pyhd3eb1b0_1
- intel-openmp=2021.4.0=h06a4308_3561
- ipython_genutils=0.2.0=pyhd3eb1b0_1
- jedi=0.18.1=py38h06a4308_1
- jpeg=9b=h024ee3a_2
- jupyter_client=7.2.2=py38h06a4308_0
- jupyter_core=4.10.0=py38h06a4308_0
- jupyterlab_pygments=0.1.2=py_0
- lame=3.100=h7f98852_1001
- libedit=3.1.20210910=h7f8727e_0
- libffi=3.2.1=hf484d3e_1007
- libgcc-ng=11.2.0=h1234567_1
- libgomp=11.2.0=h1234567_1
- libiconv=1.17=h166bdaf_0
- libpng=1.6.37=h21135ba_2
- libsodium=1.0.18=h7b6447c_0
- libstdcxx-ng=11.2.0=h1234567_1
- libtiff=4.2.0=h85742a9_0
- libuv=1.43.0=h7f98852_0
- libwebp-base=1.2.2=h7f98852_1
- lz4-c=1.9.3=h9c3ff4c_1
- markupsafe=2.1.1=py38h7f8727e_0
- mistune=0.8.4=py38h7b6447c_1000
- mkl=2021.4.0=h06a4308_640
- mkl-service=2.4.0=py38h95df7f1_0
- mkl_fft=1.3.1=py38h8666266_1
- mkl_random=1.2.2=py38h1abd341_0
- nb_conda=2.2.1=py38h06a4308_1
- nb_conda_kernels=2.3.1=py38h06a4308_0
- ncurses=6.3=h7f8727e_2
- nest-asyncio=1.5.5=py38h06a4308_0
- nettle=3.6=he412f7d_0
- ninja=1.11.0=h924138e_0
- numpy=1.22.3=py38he7a7128_0
- numpy-base=1.22.3=py38hf524024_0
- olefile=0.46=pyh9f0ad1d_1
- openh264=2.1.1=h780b84a_0
- openssl=1.1.1o=h7f8727e_0
- packaging=21.3=pyhd3eb1b0_0
- pandocfilters=1.5.0=pyhd3eb1b0_0
- parso=0.8.3=pyhd3eb1b0_0
- pexpect=4.8.0=pyhd3eb1b0_3
- pickleshare=0.7.5=pyhd3eb1b0_1003
- pillow=7.1.2=py38hb39fc2d_0
- pip=21.2.4=py38h06a4308_0
- prometheus_client=0.13.1=pyhd3eb1b0_0
- ptyprocess=0.7.0=pyhd3eb1b0_2
- pure_eval=0.2.2=pyhd3eb1b0_0
- pycparser=2.21=pyhd3eb1b0_0
- python=3.8.0=h0371630_2
- python-dateutil=2.8.2=pyhd3eb1b0_0
- python-fastjsonschema=2.15.1=pyhd3eb1b0_0
- python_abi=3.8=2_cp38
- pytorch=1.8.0=py3.8_cuda11.1_cudnn8.0.5_0
- readline=7.0=h7b6447c_5
- send2trash=1.8.0=pyhd3eb1b0_1
- setuptools=61.2.0=py38h06a4308_0
- six=1.16.0=pyh6c4a22f_0
- sqlite=3.33.0=h62c20be_0
- stack_data=0.2.0=pyhd3eb1b0_0
- testpath=0.5.0=pyhd3eb1b0_0
- tk=8.6.12=h1ccaba5_0
- torchvision=0.9.0=py38_cu111
- tornado=6.1=py38h27cfd23_0
- typing_extensions=4.2.0=pyha770c72_1
- wcwidth=0.2.5=pyhd3eb1b0_0
- wheel=0.37.1=pyhd3eb1b0_0
- xz=5.2.5=h7f8727e_1
- zeromq=4.3.4=h2531618_0
- zipp=3.8.0=py38h06a4308_0
- zlib=1.2.12=h7f8727e_2
- zstd=1.4.9=ha95c52a_0
- pip:
- absl-py==1.2.0
- anndata==0.8.0
- argon2-cffi==21.3.0
- argon2-cffi-bindings==21.2.0
- backports-zoneinfo==0.2.1
- bleach==5.0.0
- cycler==0.11.0
- debugpy==1.6.0
- dunamai==1.12.0
- fastjsonschema==2.15.3
- flatbuffers==2.0
- fonttools==4.33.3
- gast==0.4.0
- get-version==3.5.4
- grpcio==1.47.0
- h5py==3.7.0
- igraph==0.9.11
- importlib-resources==5.8.0
- iniconfig==1.1.1
- ipykernel==6.15.0
- ipython==8.4.0
- ipywidgets==7.7.0
- jinja2==3.1.2
- joblib==1.1.0
- jsonschema==4.6.0
- jupyter==1.0.0
- jupyter-client==7.3.4
- jupyter-console==6.4.3
- jupyterlab-pygments==0.2.2
- jupyterlab-widgets==1.1.0
- keras==2.9.0
- keras-nightly==2.11.0.dev2022081807
- kiwisolver==1.4.3
- legacy-api-wrap==1.2
- libclang==14.0.6
- llvmlite==0.38.1
- louvain==0.7.1
- matplotlib==3.4.2
- matplotlib-inline==0.1.3
- natsort==8.1.0
- nbclient==0.6.4
- nbconvert==6.5.0
- nbformat==5.4.0
- networkx==2.8.4
- notebook==6.4.12
- numba==0.55.2
- numexpr==2.8.1
- pandas==1.4.2
- patsy==0.5.2
- plotly==5.10.0
- pluggy==1.0.0
- polars==0.14.6
- progress==1.6
- prometheus-client==0.14.1
- prompt-toolkit==3.0.29
- psutil==5.9.1
- py==1.11.0
- pyarrow==9.0.0
- pygments==2.12.0
- pynndescent==0.5.7
- pyparsing==3.0.9
- pyrsistent==0.18.1
- pytest==7.1.2
- pytz==2022.1
- pytz-deprecation-shim==0.1.0.post0
- pyzmq==23.2.0
- qtconsole==5.3.1
- qtpy==2.1.0
- rpy2==3.4.1
- scanpy==1.9.1
- scikit-learn==1.1.1
- scipy==1.8.1
- seaborn==0.11.2
- session-info==1.0.0
- setuptools-scm==7.0.2
- sinfo==0.3.4
- snapatac2==2.0.0
- soupsieve==2.3.2.post1
- stack-data==0.3.0
- statannotations==0.4.4
- statsmodels==0.13.2
- stdlib-list==0.8.0
- tables==3.7.0
- tb-nightly==2.11.0a20220818
- tenacity==8.0.1
- tensorboard==2.9.1
- tensorflow==2.9.1
- tensorflow-estimator==2.9.0
- tensorflow-io-gcs-filesystem==0.26.0
- terminado==0.15.0
- texttable==1.6.4
- tf-estimator-nightly==2.11.0.dev2022081808
- tf-nightly==2.11.0.dev20220818
- threadpoolctl==3.1.0
- tinycss2==1.1.1
- tomli==2.0.1
- torchaudio==0.8.0
- tqdm==4.64.0
- traitlets==5.3.0
- tzdata==2022.1
- tzlocal==4.2
- umap-learn==0.5.3
- webencodings==0.5.1
- werkzeug==2.2.1
- widgetsnbextension==3.6.0
- wrapt==1.14.1