[ci] add h5py dependencies #10
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| # This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: build | |
| on: | |
| push: | |
| pull_request: | |
| schedule: | |
| - cron: '42 4 5,20 * *' | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@main | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@main | |
| with: | |
| python-version: 3 | |
| - name: Install test dependencies | |
| run: python -m pip install matplotlib "numpy<2" setuptools scipy astropy lightrayrider flake8 pycodestyle pydocstyle pytest coverage coverage_lcov[extras] | |
| - name: Install package | |
| run: python -m pip install . | |
| - name: Lint with flake8 | |
| run: flake8 xars/*.py xars/*/*.py | |
| - name: Check code style | |
| run: pycodestyle xars/*.py xars/*/*.py | |
| #- name: Check doc style | |
| # run: pydocstyle lightrayrider/*.py lightrayrider/*.pyx | |
| - name: Test with pytest | |
| run: python3 -m coverage run -a -m pytest xars/binning/__init__.py xars/xsects/__init__.py xars/geometries/layeredconetorus.py xars/geometries/conetorus.py xars/geometries/wedgetorus.py xars/coordtrans.py | |
| - name: Test package | |
| run: | | |
| cd scripts | |
| python3 -m coverage run vizfek2.py | |
| python3 -m coverage run -m xars.xsects | |
| cd .. | |
| - name: Test package | |
| run: | | |
| cd examples | |
| python3 -m coverage run torus2.py --log10nh=24.2 --opening-angle=0 --nevents=100 --output=myoutput | |
| python3 -m coverage run disk.py --nevents=100 --output=output-disk | |
| - name: Test on blobs | |
| run: | | |
| cd example-blobs | |
| echo "backend: Agg" > matplotlibrc | |
| python3 -m coverage run -a generate_blobs.py | |
| python3 -m coverage run -a ../torusC.py --geometry=torusblob23.0.hdf5 --nevents=1000 | |
| OMP_NUM_THREADS=3 python3 -m coverage run -a ../torusC.py --geometry=torusblob23.0.hdf5 --nevents=1000 | |
| cd .. | |
| - name: Test on grid | |
| run: | | |
| cd example-grid | |
| echo "backend: Agg" > matplotlibrc | |
| python3 -m coverage run -a generate_warpeddisk.py | |
| python3 -m coverage run -a ../torusG.py --geometry=warpeddisk_1.hdf5 --nevents=100 | |
| OMP_NUM_THREADS=3 python3 -m coverage run -a ../torusG.py --geometry=warpeddisk_1.hdf5 --nevents=100 | |
| cd .. | |
| - name: Run entire BNTorus geometry | |
| run: | | |
| bash runtorus.sh 100 | |
| - name: Convert coverage output to lcov for coveralls | |
| run: | | |
| cd .. | |
| coverage combine .coverage examples/.coverage examples/example-*/.coverage | |
| coverage-lcov | |
| # make paths relative | |
| sed -i s,$PWD/,,g lcov.info | |
| - name: prepare coveralls partial upload | |
| uses: coverallsapp/github-action@master | |
| with: | |
| github-token: ${{ secrets.github_token }} | |
| path-to-lcov: lcov.info | |
| flag-name: run-${{ matrix.python-version }} | |
| parallel: true | |
| finish: | |
| needs: build | |
| if: ${{ always() }} | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Coveralls Finished | |
| uses: coverallsapp/github-action@master | |
| with: | |
| github-token: ${{ secrets.github_token }} | |
| parallel-finished: true | |
| carryforward: "run-1,run-2" |