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reviewdog: Too many results (annotations) in diff. You may miss some annotations due to GitHub limitation for annotation created by logging command. Please check GitHub Actions log console to see all results. Limitation: - 10 warning annotations and 10 error annotations per step - 50 annotations per job (sum of annotations from all the steps) - 50 annotations per run (separate from the job annotations, these annotations aren't created by users) Source: https://github.com/orgs/community/discussions/26680#discussioncomment-3252835

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[JuliaFormatter] reported by reviewdog 🐶 Raw Output: docs/make.jl:22:- pages=Any[ docs/make.jl:23:- "Home" => "index.md", docs/make.jl:24:- "Quickstart" => "quickstart.md", docs/make.jl:25:- "Tutorial" => "tutorial.md", docs/make.jl:26:- "Manual" => Any[ docs/make.jl:27:- "Define a CoupledSDE" => "man/CoupledSDEs.md", docs/make.jl:28:- "Stability analysis" => "man/systemanalysis.md", docs/make.jl:29:- "Simulating the system" => "man/simulation.md", docs/make.jl:30:- "Sampling transitions" => "man/sampling.md", docs/make.jl:31:- "Large deviation theory" => "man/largedeviations.md", docs/make.jl:32:- "Noise processes" => "man/noise.md", docs/make.jl:33:- "Utilities" => "man/utils.md" docs/make.jl:19:+ pages = Any[ docs/make.jl:20:+ "Home"=>"index.md", docs/make.jl:21:+ "Quickstart"=>"quickstart.md", docs/make.jl:22:+ "Tutorial"=>"tutorial.md", docs/make.jl:23:+ "Manual"=>Any[ docs/make.jl:24:+ "Define a CoupledSDE"=>"man/CoupledSDEs.md", docs/make.jl:25:+ "Stability analysis"=>"man/systemanalysis.md", docs/make.jl:26:+ "Simulating the system"=>"man/simulation.md", docs/make.jl:27:+ "Sampling transitions"=>"man/sampling.md", docs/make.jl:28:+ "Large deviation theory"=>"man/largedeviations.md", docs/make.jl:29:+ "Noise processes"=>"man/noise.md", docs/make.jl:30:+ "Utilities"=>"man/utils.md",

[JuliaFormatter] reported by reviewdog 🐶 Raw Output: ext/basin/basinboundary.jl:12:-function CriticalTransitions.basinboundary(X, Y, h; coords::String = "plane", A::Vector = [], B::Vector = [], C::Vector = []) ext/basin/basinboundary.jl:13:- ext/basin/basinboundary.jl:14:- bb = []; ext/basin/basinboundary.jl:15:- ext/basin/basinboundary.jl:16:- for ii ∈ 1:size(h,2) ext/basin/basinboundary.jl:17:- for jj ∈ 1:size(h,1)-1 # traversing through each column of the basins of attraction ext/basin/basinboundary.jl:18:- if h[jj,ii] != h[jj+1,ii] # if two points on top of each other are not in the same boa ext/basin/basinboundary.jl:19:- if !any(v->v==-1, [h[jj,ii], h[jj+1, ii]]) # each of these points go to detected attractor ext/basin/basinboundary.jl:20:- np = [X[ii], (Y[jj]+Y[jj+1])/2]; # the value ext/basin/basinboundary.jl:21:- bb = push!(bb,np); ext/basin/basinboundary.jl:12:+function CriticalTransitions.basinboundary( ext/basin/basinboundary.jl:13:+ X, ext/basin/basinboundary.jl:14:+ Y, ext/basin/basinboundary.jl:15:+ h; ext/basin/basinboundary.jl:16:+ coords::String = "plane", ext/basin/basinboundary.jl:17:+ A::Vector = [], ext/basin/basinboundary.jl:18:+ B::Vector = [], ext/basin/basinboundary.jl:19:+ C::Vector = [], ext/basin/basinboundary.jl:20:+) ext/basin/basinboundary.jl:21:+ ext/basin/basinboundary.jl:22:+ bb = [] ext/basin/basinboundary.jl:23:+ ext/basin/basinboundary.jl:24:+ for ii ∈ 1:size(h, 2) ext/basin/basinboundary.jl:25:+ for jj ∈ 1:size(h, 1)-1 # traversing through each column of the basins of attraction ext/basin/basinboundary.jl:26:+ if h[jj, ii] != h[jj+1, ii] # if two points on top of each other are not in the same boa ext/basin/basinboundary.jl:27:+ if !any(v -> v == -1, [h[jj, ii], h[jj+1, ii]]) # each of these points go to detected attractor ext/basin/basinboundary.jl:28:+ np = [X[ii], (Y[jj] + Y[jj+1]) / 2] # the value ext/basin/basinboundary.jl:29:+ bb = push!(bb, np)

[JuliaFormatter] reported by reviewdog 🐶 Raw Output: ext/basin/basinboundary.jl:50:-function CriticalTransitions.basboundary(sys::CoupledSDEs, xrange::Vector, yrange::Vector, xspacing::Float64, attractors::Vector; ext/basin/basinboundary.jl:51:- eps1=1e-4, ext/basin/basinboundary.jl:52:- ϵ_mapper=0.1, ext/basin/basinboundary.jl:53:- dt_mapper=1.0e-3, ext/basin/basinboundary.jl:54:- solver=Vern9(), ext/basin/basinboundary.jl:55:- maxit=1e+5) ext/basin/basinboundary.jl:58:+function CriticalTransitions.basboundary( ext/basin/basinboundary.jl:59:+ sys::CoupledSDEs, ext/basin/basinboundary.jl:60:+ xrange::Vector, ext/basin/basinboundary.jl:61:+ yrange::Vector, ext/basin/basinboundary.jl:62:+ xspacing::Float64, ext/basin/basinboundary.jl:63:+ attractors::Vector; ext/basin/basinboundary.jl:64:+ eps1 = 1e-4, ext/basin/basinboundary.jl:65:+ ϵ_mapper = 0.1, ext/basin/basinboundary.jl:66:+ dt_mapper = 1.0e-3, ext/basin/basinboundary.jl:67:+ solver = Vern9(), ext/basin/basinboundary.jl:68:+ maxit = 1e+5, ext/basin/basinboundary.jl:69:+)

[JuliaFormatter] reported by reviewdog 🐶 Raw Output: ext/basin/basinboundary.jl:58:- N = round(Int64,(xrange[2]-xrange[1])/xspacing) ext/basin/basinboundary.jl:59:- bby = zeros(N+1) ext/basin/basinboundary.jl:60:- xx = range(xrange[1], xrange[2], length=N+1) ext/basin/basinboundary.jl:72:+ N = round(Int64, (xrange[2] - xrange[1]) / xspacing) ext/basin/basinboundary.jl:73:+ bby = zeros(N + 1) ext/basin/basinboundary.jl:74:+ xx = range(xrange[1], xrange[2], length = N + 1)

[JuliaFormatter] reported by reviewdog 🐶 Raw Output: ext/basin/basinboundary.jl:64:- u1,u2 = bisect_to_edge(sys, [xx[i],yrange[1]], [xx[i],yrange[2]], attractors, ext/basin/basinboundary.jl:65:- eps1=eps1, ext/basin/basinboundary.jl:66:- ϵ_mapper=ϵ_mapper, ext/basin/basinboundary.jl:67:- dt_mapper=dt_mapper, ext/basin/basinboundary.jl:68:- solver=solver, ext/basin/basinboundary.jl:69:- maxit=maxit) ext/basin/basinboundary.jl:70:- ext/basin/basinboundary.jl:71:- bby[i] = ((u1 + u2)/2)[2] ext/basin/basinboundary.jl:78:+ u1, u2 = bisect_to_edge( ext/basin/basinboundary.jl:79:+ sys, ext/basin/basinboundary.jl:80:+ [xx[i], yrange[1]], ext/basin/basinboundary.jl:81:+ [xx[i], yrange[2]], ext/basin/basinboundary.jl:82:+ attractors, ext/basin/basinboundary.jl:83:+ eps1 = eps1, ext/basin/basinboundary.jl:84:+ ϵ_mapper = ϵ_mapper, ext/basin/basinboundary.jl:85:+ dt_mapper = dt_mapper, ext/basin/basinboundary.jl:86:+ solver = solver, ext/basin/basinboundary.jl:87:+ maxit = maxit, ext/basin/basinboundary.jl:88:+ ) ext/basin/basinboundary.jl:89:+ ext/basin/basinboundary.jl:90:+ bby[i] = ((u1+u2)/2)[2]

[JuliaFormatter] reported by reviewdog 🐶 Raw Output: ext/basin/basinsofattraction.jl:26:- ϵ_mapper=0.01, ext/basin/basinsofattraction.jl:27:- showprogress=false, ext/basin/basinsofattraction.jl:28:- kwargs...) ext/basin/basinsofattraction.jl:31:+ ϵ_mapper = 0.01, ext/basin/basinsofattraction.jl:32:+ showprogress = false, ext/basin/basinsofattraction.jl:33:+ kwargs..., ext/basin/basinsofattraction.jl:34:+)

[JuliaFormatter] reported by reviewdog 🐶 Raw Output: ext/basin/basinsofattraction.jl:32:- X = range(U[1], U[2]; step = bstep[1]); # the range of projections along the B-A direction ext/basin/basinsofattraction.jl:33:- Y = range(V[1], V[2]; step = bstep[2]); # the range of projections along the C-A direction ext/basin/basinsofattraction.jl:34:- h = zeros(length(Y),length(X)); # an array to store the attractors for each initial condition ext/basin/basinsofattraction.jl:38:+ X = range(U[1], U[2]; step = bstep[1]) # the range of projections along the B-A direction ext/basin/basinsofattraction.jl:39:+ Y = range(V[1], V[2]; step = bstep[2]) # the range of projections along the C-A direction ext/basin/basinsofattraction.jl:40:+ h = zeros(length(Y), length(X)) # an array to store the attractors for each initial condition

[JuliaFormatter] reported by reviewdog 🐶 Raw Output: ext/basin/edgetrack.jl:35:-function edgetracking(sys::CoupledSDEs, u1, u2, attractors::Vector; ext/basin/edgetrack.jl:36:- eps1=1e-9, ext/basin/edgetrack.jl:37:- eps2=1e-8, ext/basin/edgetrack.jl:38:- converge=1e-5, ext/basin/edgetrack.jl:39:- dt=0.01, ext/basin/edgetrack.jl:40:- tmax=Inf, ext/basin/edgetrack.jl:41:- ϵ_mapper=0.1, ext/basin/edgetrack.jl:42:- dt_mapper=0.01, ext/basin/edgetrack.jl:43:- solver=Vern9(), ext/basin/edgetrack.jl:44:- maxit=100, ext/basin/edgetrack.jl:45:- verbose=true, ext/basin/edgetrack.jl:46:- output_all=false, ext/basin/edgetrack.jl:47:- kwargs...) ext/basin/edgetrack.jl:48:- ext/basin/edgetrack.jl:49:- diffeq = (;alg = solver) ext/basin/edgetrack.jl:35:+function edgetracking( ext/basin/edgetrack.jl:36:+ sys::CoupledSDEs, ext/basin/edgetrack.jl:37:+ u1, ext/basin/edgetrack.jl:38:+ u2, ext/basin/edgetrack.jl:39:+ attractors::Vector; ext/basin/edgetrack.jl:40:+ eps1 = 1e-9, ext/basin/edgetrack.jl:41:+ eps2 = 1e-8, ext/basin/edgetrack.jl:42:+ converge = 1e-5, ext/basin/edgetrack.jl:43:+ dt = 0.01, ext/basin/edgetrack.jl:44:+ tmax = Inf, ext/basin/edgetrack.jl:45:+ ϵ_mapper = 0.1, ext/basin/edgetrack.jl:46:+ dt_mapper = 0.01, ext/basin/edgetrack.jl:47:+ solver = Vern9(), ext/basin/edgetrack.jl:48:+ maxit = 100, ext/basin/edgetrack.jl:49:+ verbose = true, ext/basin/edgetrack.jl:50:+ output_all = false, ext/basin/edgetrack.jl:51:+ kwargs..., ext/basin/edgetrack.jl:52:+) ext/basin/edgetrack.jl:53:+ ext/basin/edgetrack.jl:54:+ diffeq = (; alg = solver)

[JuliaFormatter] reported by reviewdog 🐶 Raw Output: ext/basin/edgetrack.jl:74:-function bisect_to_edge(sys::CoupledSDEs, u1, u2, attractors::Vector; ext/basin/edgetrack.jl:75:- eps1=1e-5, ext/basin/edgetrack.jl:76:- ϵ_mapper=0.1, ext/basin/edgetrack.jl:77:- dt_mapper=1.0e-3, ext/basin/edgetrack.jl:78:- solver=Vern9(), ext/basin/edgetrack.jl:79:- maxit=1e+5, ext/basin/edgetrack.jl:80:- absto=1e-16, ext/basin/edgetrack.jl:81:- relto=1e-16, ext/basin/edgetrack.jl:82:- kwargs...) ext/basin/edgetrack.jl:83:- ext/basin/edgetrack.jl:84:- diffeq = (;alg = solver,abstol=absto,reltol=relto) ext/basin/edgetrack.jl:88:+function bisect_to_edge( ext/basin/edgetrack.jl:89:+ sys::CoupledSDEs, ext/basin/edgetrack.jl:90:+ u1, ext/basin/edgetrack.jl:91:+ u2, ext/basin/edgetrack.jl:92:+ attractors::Vector; ext/basin/edgetrack.jl:93:+ eps1 = 1e-5, ext/basin/edgetrack.jl:94:+ ϵ_mapper = 0.1, ext/basin/edgetrack.jl:95:+ dt_mapper = 1.0e-3, ext/basin/edgetrack.jl:96:+ solver = Vern9(), ext/basin/edgetrack.jl:97:+ maxit = 1e+5, ext/basin/edgetrack.jl:98:+ absto = 1e-16, ext/basin/edgetrack.jl:99:+ relto = 1e-16, ext/basin/edgetrack.jl:100:+ kwargs..., ext/basin/edgetrack.jl:101:+) ext/basin/edgetrack.jl:102:+ ext/basin/edgetrack.jl:103:+ diffeq = (; alg = solver, abstol = absto, reltol = relto)