New version: Oceananigans v0.94.0 #119454
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Nov 14, 2024
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- Registering package: Oceananigans
- Repository: https://github.com/CliMA/Oceananigans.jl
- Created by: @glwagner
- Version: v0.94.0
- Commit: 0be921d687d9abee7952f182e56259f2e52dcf7d
- Reviewed by: @glwagner
- Reference: CliMA/Oceananigans.jl@0be921d#commitcomment-149110761
- Description: 🌊 Julia software for fast, friendly, flexible, ocean-flavored fluid dynamics on CPUs and GPUs
UUID: 9e8cae18-63c1-5223-a75c-80ca9d6e9a09 Repo: https://github.com/CliMA/Oceananigans.jl.git Tree: b9d2094c5a50eb1c9d0a186a8320cacd875214a5 Registrator tree SHA: 17aec322677d9b81cdd6b9b9236b09a3f1374c6a
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Nov 14, 2024
* got the bones in place * bugfix and added first attempt at AveragingProcedure * finally working * added validation script * bit of cleanup * change abstract type names and add inbounds * simpler averaging type * bugfix in Base.summary * cleanup * Update src/TurbulenceClosures/turbulence_closure_implementations/scale_invariant_smagorinsky.jl Co-authored-by: Gregory L. Wagner <[email protected]> * change calculation of averaged fields * automate validation script * start with well-resolved noise * plot Smagorinsky coefficient * bugfix in validation * rename validation file * forgot inbounds macro * fix interpolation * simpler notation for names * fewer calculations * delete extra line * shortcutuser shortcut for directional averaging * add update_frequency to ScaleInvariantSmag * added a couple of validation scripts * put wall flow into a function and added some plotting code * finished plotting in wall_flow * removed python script * added stop_time to options * added type for averaging * changed order of types * abstracted update_frequency type * run a test case only * made it work on GPUs * pass velocities to DiffusivityFields * bugfix * bugfix * rename update_interval * bugfix * bugfix and cleanup * better IC and difference scheme in wall_flow * plot 2D snapshots and 1D means * longer stop_time * update validation scripts * improve plotting 3d turbulence validation * change advection to WENO * Generalize SmagorinskyLilly to have averaged coefficients * Use const AG = AbstractGrid * Speed up by writing out LM MM more * Add optional dims to DirectionalAveraging * fix simple_smag.jl and add more @time statements * adapt 3d_turbulence_smagorinsky.jl to new style * cleanup old code * first step towards optimization * further remove strain calculation * remove extra interpolation * pre-calculate strain rates * don't modify DiffusivityFields * standardize notation for strain rate * show methods for DirectionallyAvaragedCoefficient * retest validation scripts * fix validation * generalize filter using interpolations and improve nomenclature * Move Smagorinsky to dedicated module plus rename * Remove SmagorinskyLilly * Implement LagrangianAveraging * Update src/TurbulenceClosures/turbulence_closure_implementations/Smagorinskys/scale_invariant_operators.jl Co-authored-by: Simone Silvestri <[email protected]> * Update src/TurbulenceClosures/turbulence_closure_implementations/Smagorinskys/scale_invariant_operators.jl Co-authored-by: Simone Silvestri <[email protected]> * Fix operator bugs * Import with_Traers * Import tracer diffusivities * Fix LillyCoefficient constructor bug * Fix another bug in LillyCoefficient * another lilly coeff bug * Add visualization script * Add comparison script * Special-case SmagLilly * and show and summary methods for Smagorinsky closure and coefficients * fix docs and time stepping tests * added docstrings and exported new constructors * clarifications for lagrangian averaging procedure * add tests and improve validation * Update viz script * more tests for dynamic smagorinskys * more tests for dynamic smagorinskys * cleanup * no need to export at the submodule level * clean up old comments * remove obsolete script * Improve formatting * Better syntax with DynamicSmagorinsky * Get name into TurbulenceClosures * Defaults * fix test * formatting and correct info message for test * add info message * more detailed info * dig into whats causing the hopld up * another info statement * change info * change up info statements * more changing info statements * shift info statements around a bit more * restrict tests to catch error * uncomment steps line * no distributed tests * more info statements * more info statements * more info statements * shift info statements * shift info again * skip _compute_ll_MM! launch * simplify _compute_LM_MM * try another definition * does a simplified version work? * a bit more complexity * another variation * another variation * another variation * simplify call to off diagonal Mij * cleanup and simplify formulation with constants * avoid nested call * revert changes * add back GPU test * forgot to initialize gpu env * test time stepping * remove info statements * skip a couple of DynamicSmag tests * import dynamic smag * skip another dynamic smag test * fix test * add back into statement * skip another test * bring back tests * bring back distributed tests * add dependencies back * Update test/test_time_stepping.jl Co-authored-by: Gregory L. Wagner <[email protected]> * Update test/test_turbulence_closures.jl Co-authored-by: Gregory L. Wagner <[email protected]> --------- Co-authored-by: Gregory L. Wagner <[email protected]> Co-authored-by: Simone Silvestri <[email protected]> Co-authored-by: glwagner <[email protected]>
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