This is an R package, which contains a TxDB representing CCDS (Consensus CDS) transcripts. This is intended to be used similarly to the official BioConductor package TxDb.Hsapiens.UCSC.hg19.knownGene.

library(TxDb.Hsapiens.UCSC.hg19.ccdsGene) TxDb.Hsapiens.UCSC.hg19.ccdsGene TxDb object:

Db type: TxDb

Supporting package: GenomicFeatures

Data source: UCSC

Genome: hg19

Organism: Homo sapiens

UCSC Table: ccdsGene

Resource URL: http://genome.ucsc.edu/

Type of Gene ID: no gene ids

Full dataset: yes

miRBase build ID: NA

transcript_nrow: 28856

exon_nrow: 192900

cds_nrow: 192900

Db created by: GenomicFeatures package from Bioconductor

Creation time: 2015-09-03 11:29:23 +1000 (Thu, 03 Sep 2015)

GenomicFeatures version at creation time: 1.20.3

RSQLite version at creation time: 1.0.0

DBSCHEMAVERSION: 1.1