Somatic Module on multiple chromosomes

[Arsamat]

Hi, I found in the documentation that we can run somatic steps on multiple chromosomes in parallel by including them in the .lst file. However, from my understanding, each of them has to have its own reference GRCh38 file and seems like I can provide only one reference file per command. Is that observation correct?

[ZiyiWang7]

Hi @Arsamat,

You can use the GRCh38 reference file with all the chromosomes, which would be more efficient.