Create packages_version.rst

docs/packages_version.rst

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+.. _packages_version:
+
+*******************
+Session information 
+*******************
+
+Session information of the Asc-Seurat's environment (Docker image v2.2)
+=======================================================================
+
+sessionInfo()
+
+ R version 4.0.1 (2020-06-06) 
+ Platform: x86_64-pc-linux-gnu (64-bit)
+ Running under: Debian GNU/Linux bookworm/Matrix products: default
+
+ BLAS:   /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.10.0
+ LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.10.0
+
+locale:
+ [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
+ [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
+ [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8
+ [7] LC_PAPER=en_US.UTF-8       LC_NAME=C
+ [9] LC_ADDRESS=C               LC_TELEPHONE=C
+ [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
+
+attached base packages:
+ [1] parallel  stats4    grid      stats     graphics  grDevices utils
+ [8] datasets  methods   base
+
+other attached packages:
+ [1] glmGamPoi_1.2.0             dynfeature_1.0.0
+ [3] dynwrap_1.2.2               dynplot_1.1.2
+ [5] topGO_2.42.0                SparseM_1.81
+ [7] GO.db_3.12.1                AnnotationDbi_1.52.0
+ [9] graph_1.68.0                biomaRt_2.46.3
+ [11] multtest_2.46.0             slingshot_1.8.0
+ [13] princurve_2.1.6             SingleCellExperiment_1.12.0
+ [15] SummarizedExperiment_1.20.0 Biobase_2.50.0
+ [17] GenomicRanges_1.42.0        GenomeInfoDb_1.26.7
+ [19] IRanges_2.24.1              S4Vectors_0.28.1
+ [21] BiocGenerics_0.36.1         MatrixGenerics_1.2.1
+ [23] matrixStats_0.61.0          ComplexHeatmap_2.6.2
+ [25] vroom_1.5.7                 scales_1.1.1
+ [27] hdf5r_1.3.5                 DT_0.20
+ [29] shinycssloaders_1.0.0       ggthemes_4.2.4
+ [31] future_1.23.0               rclipboard_0.1.5
+ [33] shinyFeedback_0.4.0         shinyWidgets_0.6.4
+ [35] shiny_1.7.1                 sctransform_0.3.3
+ [37] reactable_0.2.3             circlize_0.4.13
+ [39] patchwork_1.1.1             SeuratObject_4.0.4
+ [41] Seurat_4.1.0                forcats_0.5.1
+ [43] stringr_1.4.0               dplyr_1.0.7
+ [45] purrr_0.3.4                 readr_2.1.2
+ [47] tidyr_1.2.0                 tibble_3.1.6
+ [49] ggplot2_3.3.5               tidyverse_1.3.1
+
+loaded via a namespace (and not attached):
+ [1] rappdirs_0.3.3         scattermore_0.7        GA_3.2.2
+ [4] bit64_4.0.5            irlba_2.3.5            DelayedArray_0.16.3
+ [7] data.table_1.14.2      rpart_4.1-15           RCurl_1.98-1.5
+ [10] generics_0.1.2         cowplot_1.1.1          RSQLite_2.2.9
+ [13] RANN_2.6.1             carrier_0.1.0          bit_4.0.4
+ [16] tzdb_0.2.0             spatstat.data_2.1-2    xml2_1.3.3
+ [19] lubridate_1.8.0        httpuv_1.6.5           assertthat_0.2.1
+ [22] viridis_0.6.2          fontawesome_0.2.2      hms_1.1.1
+ [25] jquerylib_0.1.4        promises_1.2.0.1       fansi_1.0.2
+ [28] progress_1.2.2         dbplyr_2.1.1           readxl_1.3.1
+ [31] igraph_1.2.11          DBI_1.1.2              htmlwidgets_1.5.4
+ [34] spatstat.geom_2.3-1    dyndimred_1.0.4        ellipsis_0.3.2
+ [37] backports_1.4.1        RcppParallel_5.1.5     deldir_1.0-6
+ [40] vctrs_0.3.8            remotes_2.4.2          Cairo_1.5-14
+ [43] ROCR_1.0-11            abind_1.4-5            cachem_1.0.6
+ [46] withr_2.4.3            ggforce_0.3.3          prettyunits_1.1.1
+ [49] goftest_1.2-3          cluster_2.1.0          ape_5.6-1
+ [52] lazyeval_0.2.2         crayon_1.4.2           babelwhale_1.0.3
+ [55] pkgconfig_2.0.3        tweenr_1.0.2           nlme_3.1-148
+ [58] rlang_1.0.0            globals_0.14.0         lifecycle_1.0.1
+ [61] miniUI_0.1.1.1         BiocFileCache_1.14.0   modelr_0.1.8
+ [64] cellranger_1.1.0       rprojroot_2.0.2        polyclip_1.10-0
+ [67] lmtest_0.9-39          Matrix_1.4-0           zoo_1.8-9
+ [70] reprex_2.0.1           ggridges_0.5.3         GlobalOptions_0.1.2
+ [73] processx_3.5.2         png_0.1-7              viridisLite_0.4.0
+ [76] rjson_0.2.21           bitops_1.0-7           KernSmooth_2.23-17
+ [79] blob_1.2.2             shape_1.4.6            parallelly_1.30.0
+ [82] memoise_2.0.1          magrittr_2.0.2         plyr_1.8.6
+ [85] ica_1.0-2              zlibbioc_1.36.0        compiler_4.0.1
+ [88] RColorBrewer_1.1-2     clue_0.3-60            fitdistrplus_1.1-6
+ [91] cli_3.1.1              XVector_0.30.0         listenv_0.8.0
+ [94] pbapply_1.5-0          ps_1.6.0               MASS_7.3-51.6
+ [97] mgcv_1.8-31            tidyselect_1.1.1       stringi_1.7.6
+ [100] yaml_2.2.2             askpass_1.1            ggrepel_0.9.1
+ [103] sass_0.4.0             tools_4.0.1            future.apply_1.8.1
+ [106] rstudioapi_0.13        foreach_1.5.1          gridExtra_2.3
+ [109] farver_2.1.0           Rtsne_0.15             ggraph_2.0.5
+ [112] proxyC_0.2.4           digest_0.6.29          dynparam_1.0.2
+ [115] Rcpp_1.0.8             broom_0.7.12           later_1.3.0
+ [118] RcppAnnoy_0.0.19       httr_1.4.2             colorspace_2.0-2
+ [121] ranger_0.13.1          rvest_1.0.2            XML_3.99-0.8
+ [124] fs_1.5.2               tensor_1.5             reticulate_1.24
+ [127] splines_4.0.1          uwot_0.1.11            lmds_0.1.0
+ [130] spatstat.utils_2.3-0   graphlayouts_0.8.0     plotly_4.10.0
+ [133] xtable_1.8-4           jsonlite_1.7.3         tidygraph_1.2.0
+ [136] R6_2.5.1               pillar_1.7.0           htmltools_0.5.2
+ [139] mime_0.12              glue_1.6.1             fastmap_1.1.0
+ [142] codetools_0.2-16       utf8_1.2.2             lattice_0.20-41
+ [145] bslib_0.3.1            spatstat.sparse_2.1-0  curl_4.3.2
+ [148] leiden_0.3.9           openssl_1.4.6          survival_3.1-12
+ [151] desc_1.4.0             dynutils_1.0.6         munsell_0.5.0
+ [154] GetoptLong_1.0.5       GenomeInfoDbData_1.2.4 iterators_1.0.13
+ [157] haven_2.4.3            reshape2_1.4.4         gtable_0.3.0
+ [160] spatstat.core_2.3-2