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Asc-Seurat - Analytical single-cell Seurat-based web application (v2.1)
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@KirstLab KirstLab released this 26 May 16:11
v2.1
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About Asc-Seurat

Asc-Seurat (Analytical single-cell Seurat-based web application) is a web application based on Shiny. Pronounced as “ask Seurat”, it provides a click-based, easy-to-install, and easy-to-use interface that allows the execution of all steps necessary for scRNA-seq analysis. It integrates many of the capabilities of the Seurat and Dynverse and also allows an instantaneous functional annotation of genes of interest using BioMart.

Please, visit https://asc-seurat.readthedocs.io/en/latest/ for a complete documentation.

Realese notes

  • v2.1 - Released on May 26th, 2021.

    • Changes the assay used for differential expression analysis and visualization to "RNA" when using SCTransform normalization. Therefore, "SCT" assay is used for the steps until clustering the data.
    • Changes the output of the differential expression analysis to the format required for the visualization tools.
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