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Skip failed tests (#7783) #2

Skip failed tests (#7783)

Skip failed tests (#7783) #2

Workflow file for this run

name: release
# generating and testing package artefacts from the main branch
on:
push:
branches:
- main
tags:
- '*'
jobs:
packaging:
runs-on: ubuntu-latest
strategy:
matrix:
python-version: ['3.9', '3.10', '3.11']
steps:
- uses: actions/checkout@v4
with:
fetch-depth: 0
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
- name: Install setuptools
run: |
python -m pip install --user --upgrade setuptools wheel
- name: Build and test source archive and wheel file
run: |
find /opt/hostedtoolcache/* -maxdepth 0 ! -name 'Python' -exec rm -rf {} \;
git fetch --depth=1 origin +refs/tags/*:refs/tags/*
root_dir=$PWD
echo "$root_dir"
set -e
# build tar.gz and wheel
python setup.py sdist bdist_wheel --build-number $(date +'%Y%m%d%H%M')
tmp_dir=$(mktemp -d)
cp dist/monai* "$tmp_dir"
cd "$tmp_dir"
ls -al
# install from tar.gz
python -m pip install monai*.tar.gz
python -c 'import monai; monai.config.print_config()' 2>&1 | grep -iv "unknown"
python -c 'import monai; print(monai.__file__)'
python -m pip uninstall -y monai
rm monai*.tar.gz
# install from wheel
python -m pip install monai*.whl
python -c 'import monai; monai.config.print_config()' 2>&1 | grep -iv "unknown"
python -c 'import monai; print(monai.__file__)'
# clean up
cd "$root_dir"
rm -r "$tmp_dir"
rm -rf monai/
ls -al .
- name: Quick test installed
run: |
python -m pip install -r requirements-min.txt
python -m tests.min_tests
env:
QUICKTEST: True
- if: matrix.python-version == '3.9' && startsWith(github.ref, 'refs/tags/')
name: Upload artifacts
uses: actions/upload-artifact@v4
with:
name: dist
path: dist/
- if: matrix.python-version == '3.9' && startsWith(github.ref, 'refs/tags/')
name: Check artifacts
run: |
ls -al dist/
rm dist/monai*.tar.gz
ls -al dist/
- if: matrix.python-version == '3.9' && startsWith(github.ref, 'refs/tags/')
name: Publish to Test PyPI
uses: pypa/gh-action-pypi-publish@release/v1
with:
password: ${{ secrets.TEST_PYPI }}
repository-url: https://test.pypi.org/legacy/
versioning:
# compute versioning file from python setup.py
# upload as artifact
if: github.repository == 'Project-MONAI/MONAI'
needs: packaging
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
# full history so that we can git describe
with:
fetch-depth: 0
- name: Set up Python 3.9
uses: actions/setup-python@v5
with:
python-version: '3.9'
- shell: bash
run: |
find /opt/hostedtoolcache/* -maxdepth 0 ! -name 'Python' -exec rm -rf {} \;
git describe
python -m pip install --user --upgrade setuptools wheel
python setup.py build
cat build/lib/monai/_version.py
- name: Upload version
uses: actions/upload-artifact@v4
with:
name: _version.py
path: build/lib/monai/_version.py
- name: Clean up directory
shell: bash
run: |
ls -al
rm -rf {*,.[^.]*}
release_tag_docker:
# if: github.repository == 'Project-MONAI/MONAI'
if: ${{ false }}
needs: versioning
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- name: Download version
uses: actions/download-artifact@v4
with:
name: _version.py
- name: Set tag
id: versioning
run: echo "tag=${GITHUB_REF#refs/*/}" >> $GITHUB_OUTPUT
- name: Check tag
env:
RELEASE_VERSION: ${{ steps.versioning.outputs.tag }}
run: |
echo "$RELEASE_VERSION"
cat _version.py
- if: startsWith(github.ref, 'refs/tags/')
name: build with the tag
env:
RELEASE_VERSION: ${{ steps.versioning.outputs.tag }}
shell: bash
run: |
find /opt/hostedtoolcache/* -maxdepth 0 ! -name 'Python' -exec rm -rf {} \;
# get tag info for versioning
mv _version.py monai/
# version checks
target=" \"version\": \"$RELEASE_VERSION\""
local=`grep "\"version\"" monai/_version.py`
echo "$target"
echo "$local"
if [[ "$local" == "$target" ]]; then
echo "matched version string"
else
echo "unmatched version string, please check the tagging branch."
exit 1
fi
# remove flake package as it is not needed on hub.docker.com
sed -i '/flake/d' requirements-dev.txt
docker build -t projectmonai/monai:"$RELEASE_VERSION" -f Dockerfile .
# distribute with a tag to hub.docker.com
echo "${{ secrets.DOCKER_PW }}" | docker login -u projectmonai --password-stdin
docker push projectmonai/monai:"$RELEASE_VERSION"
docker logout