labimotion 1.0.18

LabIMotion · Oct 31, 2023 · 4bba8a4 · 4bba8a4
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diff --git a/CHANGELOG.md b/CHANGELOG.md
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+1.1.0 - 2023-10-30
+===================
+* Initial version
+* Generic Designer
+* Workflow of Generic Element
+* Repetitation of layers
+* Drag Element to Element
+* Dataset Metadata
+* LabIMotion Template Hub Synchronization
diff --git a/Gemfile b/Gemfile
@@ -0,0 +1,25 @@
+source 'https://rubygems.org'
+git_source(:github) { |repo| "https://github.com/labimotion/#{repo}.git" }
+
+ruby '2.7.7'  ## '2.6.8'
+
+gem 'bootsnap', '>= 1.13.0', require: false
+
+group :development, :test do
+  gem 'byebug', platforms: %i[mri mingw x64_mingw]
+end
+
+group :development do
+  gem 'web-console', '>= 4.2.0'
+  gem 'listen', '~> 3.3'
+  gem 'rack-mini-profiler', '~> 2.0'
+  gem 'spring'
+end
+
+group :test do
+  gem 'capybara', '>= 3.26'
+  gem 'selenium-webdriver', '>= 4.0.0.rc1'
+  gem 'webdrivers'
+end
+
+gem 'tzinfo-data', platforms: %i[mingw mswin x64_mingw jruby]
diff --git a/Gemfile.lock b/Gemfile.lock
@@ -0,0 +1,131 @@
+GEM
+  remote: https://rubygems.org/
+  specs:
+    actionpack (6.1.7.3)
+      actionview (= 6.1.7.3)
+      activesupport (= 6.1.7.3)
+      rack (~> 2.0, >= 2.0.9)
+      rack-test (>= 0.6.3)
+      rails-dom-testing (~> 2.0)
+      rails-html-sanitizer (~> 1.0, >= 1.2.0)
+    actionview (6.1.7.3)
+      activesupport (= 6.1.7.3)
+      builder (~> 3.1)
+      erubi (~> 1.4)
+      rails-dom-testing (~> 2.0)
+      rails-html-sanitizer (~> 1.1, >= 1.2.0)
+    activemodel (6.1.7.3)
+      activesupport (= 6.1.7.3)
+    activesupport (6.1.7.3)
+      concurrent-ruby (~> 1.0, >= 1.0.2)
+      i18n (>= 1.6, < 2)
+      minitest (>= 5.1)
+      tzinfo (~> 2.0)
+      zeitwerk (~> 2.3)
+    addressable (2.8.4)
+      public_suffix (>= 2.0.2, < 6.0)
+    bindex (0.8.1)
+    bootsnap (1.16.0)
+      msgpack (~> 1.2)
+    builder (3.2.4)
+    byebug (11.1.3)
+    capybara (3.36.0)
+      addressable
+      matrix
+      mini_mime (>= 0.1.3)
+      nokogiri (~> 1.8)
+      rack (>= 1.6.0)
+      rack-test (>= 0.6.3)
+      regexp_parser (>= 1.5, < 3.0)
+      xpath (~> 3.2)
+    childprocess (4.1.0)
+    concurrent-ruby (1.2.2)
+    crass (1.0.6)
+    erubi (1.12.0)
+    ffi (1.15.5)
+    i18n (1.13.0)
+      concurrent-ruby (~> 1.0)
+    listen (3.8.0)
+      rb-fsevent (~> 0.10, >= 0.10.3)
+      rb-inotify (~> 0.9, >= 0.9.10)
+    loofah (2.21.3)
+      crass (~> 1.0.2)
+      nokogiri (>= 1.12.0)
+    matrix (0.4.2)
+    method_source (1.0.0)
+    mini_mime (1.1.2)
+    mini_portile2 (2.8.4)
+    minitest (5.18.0)
+    msgpack (1.7.0)
+    nokogiri (1.13.10)
+      mini_portile2 (~> 2.8.0)
+      racc (~> 1.4)
+    nokogiri (1.13.10-x86_64-linux)
+      racc (~> 1.4)
+    public_suffix (5.0.1)
+    racc (1.6.2)
+    rack (2.2.7)
+    rack-mini-profiler (2.3.4)
+      rack (>= 1.2.0)
+    rack-test (2.1.0)
+      rack (>= 1.3)
+    rails-dom-testing (2.0.3)
+      activesupport (>= 4.2.0)
+      nokogiri (>= 1.6)
+    rails-html-sanitizer (1.5.0)
+      loofah (~> 2.19, >= 2.19.1)
+    railties (6.1.7.3)
+      actionpack (= 6.1.7.3)
+      activesupport (= 6.1.7.3)
+      method_source
+      rake (>= 12.2)
+      thor (~> 1.0)
+    rake (13.0.6)
+    rb-fsevent (0.11.2)
+    rb-inotify (0.10.1)
+      ffi (~> 1.0)
+    regexp_parser (2.8.0)
+    rexml (3.2.5)
+    rubyzip (2.3.2)
+    selenium-webdriver (4.1.0)
+      childprocess (>= 0.5, < 5.0)
+      rexml (~> 3.2, >= 3.2.5)
+      rubyzip (>= 1.2.2)
+    spring (3.1.1)
+    thor (1.2.2)
+    tzinfo (2.0.6)
+      concurrent-ruby (~> 1.0)
+    web-console (4.2.0)
+      actionview (>= 6.0.0)
+      activemodel (>= 6.0.0)
+      bindex (>= 0.4.0)
+      railties (>= 6.0.0)
+    webdrivers (5.2.0)
+      nokogiri (~> 1.6)
+      rubyzip (>= 1.3.0)
+      selenium-webdriver (~> 4.0)
+    xpath (3.2.0)
+      nokogiri (~> 1.8)
+    zeitwerk (2.6.8)
+
+PLATFORMS
+  ruby
+  x86_64-linux
+
+DEPENDENCIES
+  bootsnap (>= 1.13.0)
+  byebug
+  capybara (>= 3.26)
+  listen (~> 3.3)
+  rack-mini-profiler (~> 2.0)
+  selenium-webdriver (>= 4.0.0.rc1)
+  spring
+  tzinfo-data
+  web-console (>= 4.2.0)
+  webdrivers
+
+RUBY VERSION
+   ruby 2.7.7p221
+
+BUNDLED WITH
+   2.2.29
diff --git a/README.md b/README.md
@@ -1 +1,68 @@
-# labimotion
+# LabIMotion [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.3755759.svg)](https://doi.org/10.5281/zenodo.8305411)
+
+LabIMotion is a software that provides the option to design new modules that can be adapted to the needs of the scientists. It includes Generic Elements, Segments, and Datasets.
+They are structured using Components, which are introduced as layers and fields. Each generic element, segment, or dataset has the capacity to encompass multiple layers, and within each layer, there is the potential for multiple fields to be present. This hierarchical arrangement allows for a flexible and comprehensive organization of data and information.
+
+
+
+![Design Principles](https://www.chemotion.net/assets/images/generic_feature_outline-a58eee8e02ca7247e54f7ad17ee2c102.png)
+
+
+## Version 1.0.18 of LabIMotion, featuring:
+
+* Generic Designer
+* Workflow of Generic Element
+* Repetitation of layers
+* Drag Element to Element
+* Dataset Metadata
+* LabIMotion Template Hub Synchronization [**[LabIMotion Template Hub]**]
+
+---
+
+This repository contains a backend service for the LabIMotion. It is written in **[Ruby]**.
+
+### Community
+
+  * [GitHub discussions](https://github.com/LabIMotion/labimotion/discussions)
+
+### Code
+
+  * [GitHub code](https://github.com/LabIMotion/labimotion) and [bug tracker](https://github.com/LabIMotion/labimotion/issues)
+
+---
+
+
+## Documentation
+
+Documentation for users **⸢ [Documentation] ⸥**
+
+Documentation for developers **⸢ [Technical Documentation] ⸥**
+
+---
+
+## License
+
+Code released under the [AGPL-3.0 License]([https://www.gnu.org/licenses/agpl-3.0.txt](https://www.gnu.org/licenses/agpl-3.0.txt)).
+
+---
+
+## Acknowledgments
+
+This project has been funded by the **[DFG]**.
+
+[![DFG Logo]][DFG]
+
+
+Funded by the [Deutsche Forschungsgemeinschaft (DFG, German Research Foundation)](https://www.dfg.de/) under the [National Research Data Infrastructure – NFDI4Chem](https://nfdi4chem.de/) – Projektnummer **441958208** since 2020.
+
+
+
+<!----------------------------------------------------------------------------->
+[Documentation]: https://www.chemotion.net/docs/labimotion/
+[Technical Documentation]: https://www.rubydoc.info/gems/labimotion
+[DFG]: https://www.dfg.de/en/
+[DFG Logo]: https://www.dfg.de/zentralablage/bilder/service/logos_corporate_design/logo_negativ_267.png
+[Nicole Jung]: mailto:[email protected]
+[Karlsruhe Institute of Technology]: https://www.kit.edu/english/
+[Ruby]: https://www.ruby-lang.org/
+[LabIMotion Template Hub]: https://www.chemotion-repository.net/home/genericHub
diff --git a/db/seeds/dataset_klasses.json b/db/seeds/dataset_klasses.json
@@ -0,0 +1,59 @@
+{
+  "chmo": [
+    {
+      "id": "CHMO:0000593",
+      "label": "1H nuclear magnetic resonance spectroscopy",
+      "position": 10,
+      "synonym": "1H NMR"
+    },
+    {
+      "id": "CHMO:0000595",
+      "label": "13C nuclear magnetic resonance spectroscopy",
+      "position": 20,
+      "synonym": "13C NMR"
+    },
+    {
+      "id": "CHMO:0000470",
+      "label": "mass spectrometry",
+      "position": 30,
+      "synonym": "MS"
+    },
+    {
+      "id": "CHMO:0001075",
+      "label": "elemental analysis",
+      "position": 40,
+      "synonym": "EA"
+    },
+    {
+      "id": "CHMO:0000497",
+      "label": "gas chromatography-mass spectrometry",
+      "position": 50,
+      "synonym": "GCMS"
+    },
+    {
+      "id": "CHMO:0001009",
+      "label": "high-performance liquid chromatography",
+      "position": 60,
+      "synonym": "HPLC"
+    },
+    {
+      "id": "CHMO:0000630",
+      "label": "infrared absorption spectroscopy",
+      "position": 70,
+      "synonym": "IR"
+    },
+    {
+      "id": "CHMO:0001007",
+      "label": "thin-layer chromatography",
+      "position": 80,
+      "synonym": "TLC"
+    },
+    {
+      "id": "CHMO:0000292",
+      "label": "ultraviolet-visible spectrophotometry",
+      "position": 90,
+      "synonym": "UV-VIS"
+    }
+  ]
+}
+
diff --git a/labimotion.gemspec b/labimotion.gemspec
@@ -0,0 +1,14 @@
+require_relative "lib/labimotion/version"
+
+Gem::Specification.new do |spec|
+  spec.name          = 'labimotion'
+  spec.version       = Labimotion::VERSION
+  spec.summary       = 'Chemotion LabIMotion'
+  spec.authors       = ['Chia-Lin Lin', 'Pei-Chi Huang']
+  spec.email         = ['[email protected]', '[email protected]']
+  spec.homepage      = 'https://github.com/LabIMotion/labimotion'
+  spec.license       = 'AGPL-3.0'
+  spec.files         = Dir['lib/**/*.rb', 'labimotion.rb']
+  spec.require_paths = ['lib']
+  spec.add_dependency "rails", "~> 6.1.7"
+end