Merge pull request #44 from MD-Anderson-Bioinformatics/update_install… #22
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| on: | |
| push: | |
| branches: | |
| - main | |
| tags: | |
| -'*' | |
| workflow_dispatch: | |
| name: Build documentation website | |
| ## | |
| ## This job: | |
| ## - re-renders the index.md file from index.Rmd, | |
| ## - builds pgkdown website | |
| ## - deploys pgkdown website | |
| ## | |
| jobs: | |
| build-pkgdown-site: | |
| runs-on: macOS-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| JAVA_VERSION: 11 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| extra-repositories: "https://md-anderson-bioinformatics.r-universe.dev" | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: any::pkgdown, local::. | |
| needs: website | |
| - name: Set up JDK for java ${{ env.JAVA_VERSION }} | |
| uses: actions/setup-java@v3 | |
| with: | |
| java-version: "${{ env.JAVA_VERSION }}" | |
| distribution: 'temurin' | |
| - name: Render index.Rmd (landing page for website) | |
| run: Rscript -e 'rmarkdown::render("index.Rmd", "md_document"); print(sessionInfo())' | |
| - name: Deploy package | |
| run: | | |
| git config --local user.email "[email protected]" | |
| git config --local user.name "GitHub Actions" | |
| Rscript -e 'pkgdown::deploy_to_branch(new_process = FALSE)' |