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4 changes: 2 additions & 2 deletions MDANCE.html
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<div class="line">* <a class="reference external" href="https://doi.org/10.1021/acs.jctc.4c00308">https://doi.org/10.1021/acs.jctc.4c00308</a></div>
<div class="line">* <a class="reference external" href="https://doi.org/10.1021/acs.jctc.4c00362">https://doi.org/10.1021/acs.jctc.4c00362</a></div>
</div>
<div class="line">🧪 <strong>Tests (latest):</strong> <a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="MDANCE develop CI status" src="https://img.shields.io/badge/latest-passed-green.svg" /></a></div>
<div class="line">🧪 <strong>Tests (develop):</strong> <a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="MDANCE develop CI status" src="https://img.shields.io/badge/develop-passed-green.svg" /></a></div>
<div class="line">🧪 <strong>Tests (latest):</strong> <a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="MDANCE develop CI status" src="https://img.shields.io/badge/latest-failed-red.svg" /></a></div>
<div class="line">🧪 <strong>Tests (develop):</strong> <a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="MDANCE develop CI status" src="https://img.shields.io/badge/develop-failed-red.svg" /></a></div>
<div class="line"><strong>Description:</strong></div>
<div class="line"><em>flexible n-ary clustering package for Molecular Dynamics trajectories.</em></div>
</div>
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4 changes: 2 additions & 2 deletions PathSimAnalysis.html
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<div class="line-block">
<div class="line">* <a class="reference external" href="https://doi.org/10.1371/journal.pcbi.1004568">https://doi.org/10.1371/journal.pcbi.1004568</a></div>
</div>
<div class="line">🧪 <strong>Tests (latest):</strong> <a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="PathSimAnalysis develop CI status" src="https://img.shields.io/badge/latest-passed-green.svg" /></a></div>
<div class="line">🧪 <strong>Tests (develop):</strong> <a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="PathSimAnalysis develop CI status" src="https://img.shields.io/badge/develop-passed-green.svg" /></a></div>
<div class="line">🧪 <strong>Tests (latest):</strong> <a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="PathSimAnalysis develop CI status" src="https://img.shields.io/badge/latest-failed-red.svg" /></a></div>
<div class="line">🧪 <strong>Tests (develop):</strong> <a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="PathSimAnalysis develop CI status" src="https://img.shields.io/badge/develop-failed-red.svg" /></a></div>
<div class="line"><strong>Description:</strong></div>
<div class="line"><em>An MDAKit that calculates the geometric similarity of molecular dynamics trajectories using path metrics such as the Hausdorff or Fréchet distances.</em></div>
</div>
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4 changes: 2 additions & 2 deletions ProLIF.html
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<div class="line">* <a class="reference external" href="https://doi.org/10.1186/s13321-021-00548-6">https://doi.org/10.1186/s13321-021-00548-6</a></div>
<div class="line">* <a class="reference external" href="https://zenodo.org/record/7332369">https://zenodo.org/record/7332369</a></div>
</div>
<div class="line">🧪 <strong>Tests (latest):</strong> <a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="ProLIF develop CI status" src="https://img.shields.io/badge/latest-passed-green.svg" /></a></div>
<div class="line">🧪 <strong>Tests (develop):</strong> <a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="ProLIF develop CI status" src="https://img.shields.io/badge/develop-passed-green.svg" /></a></div>
<div class="line">🧪 <strong>Tests (latest):</strong> <a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="ProLIF develop CI status" src="https://img.shields.io/badge/latest-failed-red.svg" /></a></div>
<div class="line">🧪 <strong>Tests (develop):</strong> <a class="reference external" href="https://github.com/MDAnalysis/MDAKits/actions"><img alt="ProLIF develop CI status" src="https://img.shields.io/badge/develop-failed-red.svg" /></a></div>
<div class="line"><strong>Description:</strong></div>
<div class="line"><em>Interaction Fingerprints for protein-ligand complexes and more</em></div>
</div>
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4 changes: 2 additions & 2 deletions _sources/MDANCE.rst.txt
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Expand Up @@ -38,11 +38,11 @@ The source code of MDANCE can be installed using the following:
.. _`MDANCE authors`:
https://github.com/mqcomplab/MDANCE/blob/main/AUTHORS.md

.. |MDANCE_latest| image:: https://img.shields.io/badge/latest-passed-green.svg
.. |MDANCE_latest| image:: https://img.shields.io/badge/latest-failed-red.svg
:alt: MDANCE develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

.. |MDANCE_develop| image:: https://img.shields.io/badge/develop-passed-green.svg
.. |MDANCE_develop| image:: https://img.shields.io/badge/develop-failed-red.svg
:alt: MDANCE develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

4 changes: 2 additions & 2 deletions _sources/PathSimAnalysis.rst.txt
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Expand Up @@ -38,11 +38,11 @@ The source code of PathSimAnalysis can be installed using the following:
.. _`PathSimAnalysis authors`:
https://github.com/MDAnalysis/PathSimAnalysis/blob/main/AUTHORS.md

.. |PathSimAnalysis_latest| image:: https://img.shields.io/badge/latest-passed-green.svg
.. |PathSimAnalysis_latest| image:: https://img.shields.io/badge/latest-failed-red.svg
:alt: PathSimAnalysis develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

.. |PathSimAnalysis_develop| image:: https://img.shields.io/badge/develop-passed-green.svg
.. |PathSimAnalysis_develop| image:: https://img.shields.io/badge/develop-failed-red.svg
:alt: PathSimAnalysis develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

4 changes: 2 additions & 2 deletions _sources/ProLIF.rst.txt
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pip install rdkit
pip install "prolif[dev] @ git+https://github.com/chemosim-lab/ProLIF@master"
.. |ProLIF_latest| image:: https://img.shields.io/badge/latest-passed-green.svg
.. |ProLIF_latest| image:: https://img.shields.io/badge/latest-failed-red.svg
:alt: ProLIF develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

.. |ProLIF_develop| image:: https://img.shields.io/badge/develop-passed-green.svg
.. |ProLIF_develop| image:: https://img.shields.io/badge/develop-failed-red.svg
:alt: ProLIF develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

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Expand Up @@ -35,7 +35,7 @@ The source code of maicos can be installed using the following:
.. _`maicos authors`:
https://gitlab.com/maicos-devel/maicos/-/blob/main/AUTHORS.rst

.. |maicos_latest| image:: https://img.shields.io/badge/latest-passed-green.svg
.. |maicos_latest| image:: https://img.shields.io/badge/latest-failed-red.svg
:alt: maicos develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

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2 changes: 1 addition & 1 deletion _sources/mdachecker.rst.txt
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pip install git+https://github.com/IAlibay/CheckStructure@main
.. |mdachecker_latest| image:: https://img.shields.io/badge/latest-passed-green.svg
.. |mdachecker_latest| image:: https://img.shields.io/badge/latest-failed-red.svg
:alt: mdachecker develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

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2 changes: 1 addition & 1 deletion _sources/mdacli.rst.txt
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Expand Up @@ -36,7 +36,7 @@ The source code of mdacli can be installed using the following:
.. _`mdacli authors`:
https://github.com/MDAnalysis/mdacli/blob/main/docs/AUTHORS.rst

.. |mdacli_latest| image:: https://img.shields.io/badge/latest-passed-green.svg
.. |mdacli_latest| image:: https://img.shields.io/badge/latest-failed-red.svg
:alt: mdacli develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

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4 changes: 2 additions & 2 deletions _sources/mdaencore.rst.txt
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Expand Up @@ -38,11 +38,11 @@ The source code of mdaencore can be installed using the following:
.. _`mdaencore authors`:
https://github.com/MDAnalysis/mdaencore/blob/main/AUTHORS.md

.. |mdaencore_latest| image:: https://img.shields.io/badge/latest-passed-green.svg
.. |mdaencore_latest| image:: https://img.shields.io/badge/latest-failed-red.svg
:alt: mdaencore develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

.. |mdaencore_develop| image:: https://img.shields.io/badge/develop-passed-green.svg
.. |mdaencore_develop| image:: https://img.shields.io/badge/develop-failed-red.svg
:alt: mdaencore develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

2 changes: 1 addition & 1 deletion _sources/mdahole2.rst.txt
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Expand Up @@ -38,7 +38,7 @@ The source code of mdahole2 can be installed using the following:
.. _`mdahole2 authors`:
https://github.com/MDAnalysis/mdahole2/blob/main/AUTHORS.md

.. |mdahole2_latest| image:: https://img.shields.io/badge/latest-passed-green.svg
.. |mdahole2_latest| image:: https://img.shields.io/badge/latest-failed-red.svg
:alt: mdahole2 develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

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4 changes: 2 additions & 2 deletions _sources/mdakit-sasa.rst.txt
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Expand Up @@ -39,11 +39,11 @@ The source code of mdakit-sasa can be installed using the following:
.. _`mdakit-sasa authors`:
https://github.com/pegerto/mdakit_sasa/blob/main/AUTHORS.md

.. |mdakit-sasa_latest| image:: https://img.shields.io/badge/latest-passed-green.svg
.. |mdakit-sasa_latest| image:: https://img.shields.io/badge/latest-failed-red.svg
:alt: mdakit-sasa develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

.. |mdakit-sasa_develop| image:: https://img.shields.io/badge/develop-passed-green.svg
.. |mdakit-sasa_develop| image:: https://img.shields.io/badge/develop-failed-red.svg
:alt: mdakit-sasa develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

58 changes: 29 additions & 29 deletions _sources/mdakits.rst.txt
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Expand Up @@ -154,70 +154,70 @@ Each of the MDAKits in the following table links to a page with more details abo
.. _`waterdynamics authors`:
https://github.com/MDAnalysis/waterdynamics/blob/main/AUTHORS.md

.. |waterdynamics_latest| image:: https://img.shields.io/badge/latest-passed-green.svg
.. |waterdynamics_latest| image:: https://img.shields.io/badge/latest-failed-red.svg
:alt: waterdynamics develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

.. |waterdynamics_develop| image:: https://img.shields.io/badge/develop-passed-green.svg
.. |waterdynamics_develop| image:: https://img.shields.io/badge/develop-failed-red.svg
:alt: waterdynamics develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

.. _`transport-analysis authors`:
https://github.com/MDAnalysis/transport-analysis/blob/main/AUTHORS.md

.. |transport-analysis_latest| image:: https://img.shields.io/badge/latest-passed-green.svg
.. |transport-analysis_latest| image:: https://img.shields.io/badge/latest-failed-red.svg
:alt: transport-analysis develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

.. |transport-analysis_develop| image:: https://img.shields.io/badge/develop-passed-green.svg
.. |transport-analysis_develop| image:: https://img.shields.io/badge/develop-failed-red.svg
:alt: transport-analysis develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

.. _`MDANCE authors`:
https://github.com/mqcomplab/MDANCE/blob/main/AUTHORS.md

.. |MDANCE_latest| image:: https://img.shields.io/badge/latest-passed-green.svg
.. |MDANCE_latest| image:: https://img.shields.io/badge/latest-failed-red.svg
:alt: MDANCE develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

.. |MDANCE_develop| image:: https://img.shields.io/badge/develop-passed-green.svg
.. |MDANCE_develop| image:: https://img.shields.io/badge/develop-failed-red.svg
:alt: MDANCE develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

.. _`mdaencore authors`:
https://github.com/MDAnalysis/mdaencore/blob/main/AUTHORS.md

.. |mdaencore_latest| image:: https://img.shields.io/badge/latest-passed-green.svg
.. |mdaencore_latest| image:: https://img.shields.io/badge/latest-failed-red.svg
:alt: mdaencore develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

.. |mdaencore_develop| image:: https://img.shields.io/badge/develop-passed-green.svg
.. |mdaencore_develop| image:: https://img.shields.io/badge/develop-failed-red.svg
:alt: mdaencore develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

.. _`membrane-curvature authors`:
https://github.com/MDAnalysis/membrane-curvature/blob/main/AUTHORS

.. |membrane-curvature_latest| image:: https://img.shields.io/badge/latest-passed-green.svg
.. |membrane-curvature_latest| image:: https://img.shields.io/badge/latest-failed-red.svg
:alt: membrane-curvature develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

.. |membrane-curvature_develop| image:: https://img.shields.io/badge/develop-passed-green.svg
.. |membrane-curvature_develop| image:: https://img.shields.io/badge/develop-failed-red.svg
:alt: membrane-curvature develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

.. _`maicos authors`:
https://gitlab.com/maicos-devel/maicos/-/blob/main/AUTHORS.rst

.. |maicos_latest| image:: https://img.shields.io/badge/latest-passed-green.svg
.. |maicos_latest| image:: https://img.shields.io/badge/latest-failed-red.svg
:alt: maicos develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

.. |maicos_develop| image:: https://img.shields.io/badge/develop-passed-green.svg
:alt: maicos develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

.. |mdachecker_latest| image:: https://img.shields.io/badge/latest-passed-green.svg
.. |mdachecker_latest| image:: https://img.shields.io/badge/latest-failed-red.svg
:alt: mdachecker develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

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.. _`pytim authors`:
https://github.com/Marcello-Sega/pytim/blob/master/AUTHORS.md

.. |pytim_latest| image:: https://img.shields.io/badge/latest-passed-green.svg
.. |pytim_latest| image:: https://img.shields.io/badge/latest-failed-red.svg
:alt: pytim develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

.. |pytim_develop| image:: https://img.shields.io/badge/develop-passed-green.svg
.. |pytim_develop| image:: https://img.shields.io/badge/develop-failed-red.svg
:alt: pytim develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

.. _`mdacli authors`:
https://github.com/MDAnalysis/mdacli/blob/main/docs/AUTHORS.rst

.. |mdacli_latest| image:: https://img.shields.io/badge/latest-passed-green.svg
.. |mdacli_latest| image:: https://img.shields.io/badge/latest-failed-red.svg
:alt: mdacli develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

.. |mdacli_develop| image:: https://img.shields.io/badge/develop-passed-green.svg
:alt: mdacli develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

.. |ProLIF_latest| image:: https://img.shields.io/badge/latest-passed-green.svg
.. |ProLIF_latest| image:: https://img.shields.io/badge/latest-failed-red.svg
:alt: ProLIF develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

.. |ProLIF_develop| image:: https://img.shields.io/badge/develop-passed-green.svg
.. |ProLIF_develop| image:: https://img.shields.io/badge/develop-failed-red.svg
:alt: ProLIF develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

.. _`mdakit-sasa authors`:
https://github.com/pegerto/mdakit_sasa/blob/main/AUTHORS.md

.. |mdakit-sasa_latest| image:: https://img.shields.io/badge/latest-passed-green.svg
.. |mdakit-sasa_latest| image:: https://img.shields.io/badge/latest-failed-red.svg
:alt: mdakit-sasa develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

.. |mdakit-sasa_develop| image:: https://img.shields.io/badge/develop-passed-green.svg
.. |mdakit-sasa_develop| image:: https://img.shields.io/badge/develop-failed-red.svg
:alt: mdakit-sasa develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

.. |solvation-analysis_latest| image:: https://img.shields.io/badge/latest-passed-green.svg
.. |solvation-analysis_latest| image:: https://img.shields.io/badge/latest-failed-red.svg
:alt: solvation-analysis develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

.. |solvation-analysis_develop| image:: https://img.shields.io/badge/develop-passed-green.svg
.. |solvation-analysis_develop| image:: https://img.shields.io/badge/develop-failed-red.svg
:alt: solvation-analysis develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

.. _`PathSimAnalysis authors`:
https://github.com/MDAnalysis/PathSimAnalysis/blob/main/AUTHORS.md

.. |PathSimAnalysis_latest| image:: https://img.shields.io/badge/latest-passed-green.svg
.. |PathSimAnalysis_latest| image:: https://img.shields.io/badge/latest-failed-red.svg
:alt: PathSimAnalysis develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

.. |PathSimAnalysis_develop| image:: https://img.shields.io/badge/develop-passed-green.svg
.. |PathSimAnalysis_develop| image:: https://img.shields.io/badge/develop-failed-red.svg
:alt: PathSimAnalysis develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

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:alt: propkatraj develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

.. |propkatraj_develop| image:: https://img.shields.io/badge/develop-passed-green.svg
.. |propkatraj_develop| image:: https://img.shields.io/badge/develop-failed-red.svg
:alt: propkatraj develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

.. _`mdahole2 authors`:
https://github.com/MDAnalysis/mdahole2/blob/main/AUTHORS.md

.. |mdahole2_latest| image:: https://img.shields.io/badge/latest-passed-green.svg
.. |mdahole2_latest| image:: https://img.shields.io/badge/latest-failed-red.svg
:alt: mdahole2 develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

Expand All @@ -340,11 +340,11 @@ Each of the MDAKits in the following table links to a page with more details abo
.. _`zarrtraj authors`:
https://github.com/Becksteinlab/zarrtraj/blob/main/AUTHORS.md

.. |zarrtraj_latest| image:: https://img.shields.io/badge/latest-passed-green.svg
.. |zarrtraj_latest| image:: https://img.shields.io/badge/latest-failed-red.svg
:alt: zarrtraj develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

.. |zarrtraj_develop| image:: https://img.shields.io/badge/develop-passed-green.svg
.. |zarrtraj_develop| image:: https://img.shields.io/badge/develop-failed-red.svg
:alt: zarrtraj develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

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.. _`openmm-mdanalysis-reporter authors`:
https://github.com/sef43/openmm-mdanalysis-reporter/blob/main/AUTHORS.md

.. |openmm-mdanalysis-reporter_latest| image:: https://img.shields.io/badge/latest-passed-green.svg
.. |openmm-mdanalysis-reporter_latest| image:: https://img.shields.io/badge/latest-failed-red.svg
:alt: openmm-mdanalysis-reporter develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

.. |openmm-mdanalysis-reporter_develop| image:: https://img.shields.io/badge/develop-passed-green.svg
.. |openmm-mdanalysis-reporter_develop| image:: https://img.shields.io/badge/develop-failed-red.svg
:alt: openmm-mdanalysis-reporter develop CI status
:target: https://github.com/MDAnalysis/MDAKits/actions

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