fix: bump + format version

.nf-core.yml

@@ -18,5 +18,5 @@ template:
   org: nf-core
   outdir: .
   skip_features: null
-  version: 1.0dev
+  version: 1.2.0
 update: null

assets/multiqc_config.yml

@@ -1,7 +1,7 @@
 report_comment: >
-  This report has been generated by the <a href="https://github.com/nf-core/crispriscreen/tree/dev" target="_blank">nf-core/crispriscreen</a>
+  This report has been generated by the <a href="https://github.com/nf-core/crispriscreen/releases/tag/1.2.0" target="_blank">nf-core/crispriscreen</a>
   analysis pipeline. For information about how to interpret these results, please see the
-  <a href="https://nf-co.re/crispriscreen/dev/docs/output" target="_blank">documentation</a>.
+  <a href="https://nf-co.re/crispriscreen/1.2.0/docs/output" target="_blank">documentation</a>.
 report_section_order:
   "nf-core-crispriscreen-methods-description":
     order: -1000

nextflow.config

@@ -191,9 +191,6 @@ profiles {
 // Load nf-core custom profiles from different Institutions
 includeConfig !System.getenv('NXF_OFFLINE') && params.custom_config_base ? "${params.custom_config_base}/nfcore_custom.config" : "/dev/null"
 
-// Load nf-core/crispriscreen custom profiles from different institutions.
-// includeConfig !System.getenv('NXF_OFFLINE') && params.custom_config_base ? "${params.custom_config_base}/pipeline/crispriscreen.config" : "/dev/null"
-
 // Set default registry for Apptainer, Docker, Podman, Charliecloud and Singularity independent of -profile
 // Will not be used unless Apptainer / Docker / Podman / Charliecloud / Singularity are enabled
 // Set to your registry if you have a mirror of containers
@@ -255,7 +252,7 @@ manifest {
     description     = """Pipeline to process next generation sequencing data obtained from CRISPRi repression library screenings."""
     mainScript      = 'main.nf'
     nextflowVersion = '!>=24.04.2'
-    version         = '1.0dev'
+    version         = '1.2.0'
     doi             = ''
 }