Skip to content

Commit

Permalink
Update README.md
Browse files Browse the repository at this point in the history
  • Loading branch information
@david-nemirovsky
david-nemirovsky committed Oct 12, 2023
1 parent 29ae4ec commit f34dba7
Showing 1 changed file with 162 additions and 23 deletions.
185 changes: 162 additions & 23 deletions profile/README.md
View file
Original file line number Diff line number Diff line change
@@ -1,9 +1,8 @@

<!-- README.md is generated from README.Rmd. Please edit that file -->

# **MSKCC-Epi-Bio**

*Updated 2023-10-11 12:03:45*
*Updated 2023-10-12 19:19:30.032266*

This GitHub organization hosts code, presentations and other resources
created by members of Memorial Sloan Kettering’s Department of
Expand All @@ -19,47 +18,187 @@ outcomes
R, implementing decision curves in python
([dcurves](https://github.com/MSKCC-Epi-Bio/dcurves)), as well as a set
of SAS macros for common tasks such as creating a Table 1
([msk_SAS_macros](https://github.com/MSKCC-Epi-Bio/msk_SAS_macros)).
([msk\_SAS\_macros](https://github.com/MSKCC-Epi-Bio/msk_SAS_macros)).

------------------------------------------------------------------------

## **R Packages**

| Package | CRAN Downloads (All-Time) | GitHub Stars | Last Updated | About |
|:------------------------------------------------------------------|:-------------------------:|:------------:|:------------:|:------------------------------------------------------------------------------------------|
| [gnomeR](https://github.com/MSKCC-Epi-Bio/gnomeR) | | 25 | 10/10/2023 | Package to wrangle and visualize genomic data in R |
| [PROscorerTools](https://github.com/MSKCC-Epi-Bio/PROscorerTools) | 24350 | 1 | 03/07/2022 | Tools to Score Patient-Reported Outcome (PRO) Measures and Other Psychometric Instruments |
| [SvyNom](https://github.com/MSKCC-Epi-Bio/SvyNom) | 37994 | 0 | 04/28/2022 | |
| [tidycmprsk](https://github.com/MSKCC-Epi-Bio/tidycmprsk) | 59511 | 19 | 07/15/2023 | |
<table>
<colgroup>
<col style="width: 9%" />
<col style="width: 16%" />
<col style="width: 8%" />
<col style="width: 8%" />
<col style="width: 56%" />
</colgroup>
<thead>
<tr class="header">
<th style="text-align: left;">Package</th>
<th style="text-align: center;">CRAN Downloads (All-Time)</th>
<th style="text-align: center;">GitHub Stars</th>
<th style="text-align: center;">Last Updated</th>
<th style="text-align: left;">About</th>
</tr>
</thead>
<tbody>
<tr class="odd">
<td style="text-align: left;"><a
href="https://github.com/MSKCC-Epi-Bio/gnomeR">gnomeR</a></td>
<td style="text-align: center;"></td>
<td style="text-align: center;">25</td>
<td style="text-align: center;">10/12/2023</td>
<td style="text-align: left;">Package to wrangle and visualize genomic
data in R</td>
</tr>
<tr class="even">
<td style="text-align: left;"><a
href="https://github.com/MSKCC-Epi-Bio/PROscorerTools">PROscorerTools</a></td>
<td style="text-align: center;">24359</td>
<td style="text-align: center;">1</td>
<td style="text-align: center;">03/07/2022</td>
<td style="text-align: left;">Tools to Score Patient-Reported Outcome
(PRO) Measures and Other Psychometric Instruments</td>
</tr>
<tr class="odd">
<td style="text-align: left;"><a
href="https://github.com/MSKCC-Epi-Bio/SvyNom">SvyNom</a></td>
<td style="text-align: center;">38001</td>
<td style="text-align: center;">0</td>
<td style="text-align: center;">04/28/2022</td>
<td style="text-align: left;"></td>
</tr>
<tr class="even">
<td style="text-align: left;"><a
href="https://github.com/MSKCC-Epi-Bio/tidycmprsk">tidycmprsk</a></td>
<td style="text-align: center;">59826</td>
<td style="text-align: center;">19</td>
<td style="text-align: center;">07/15/2023</td>
<td style="text-align: left;"></td>
</tr>
</tbody>
</table>

------------------------------------------------------------------------

## **Python Packages**

| Package | GitHub Stars | Last Updated | About |
|:----------------------------------------------------|:------------:|:------------:|:---------------------------------------------------------------------------------------------------------------------|
| [dcurves](https://github.com/MSKCC-Epi-Bio/dcurves) | 15 | 09/12/2023 | Python package for Andrew Vickers’ Decision Curve Analysis method to evaluate prediction models and diagnostic tests |

<table>
<colgroup>
<col style="width: 5%" />
<col style="width: 9%" />
<col style="width: 9%" />
<col style="width: 76%" />
</colgroup>
<thead>
<tr class="header">
<th style="text-align: left;">Package</th>
<th style="text-align: center;">GitHub Stars</th>
<th style="text-align: center;">Last Updated</th>
<th style="text-align: left;">About</th>
</tr>
</thead>
<tbody>
<tr class="odd">
<td style="text-align: left;"><a
href="https://github.com/MSKCC-Epi-Bio/dcurves">dcurves</a></td>
<td style="text-align: center;">15</td>
<td style="text-align: center;">09/12/2023</td>
<td style="text-align: left;">Python package for Andrew Vickers’
Decision Curve Analysis method to evaluate prediction models and
diagnostic tests</td>
</tr>
</tbody>
</table>

------------------------------------------------------------------------

## **SAS Repositories**

| Repository | GitHub Stars | Last Updated | About |
|:----------------------------------------------------------------------------------|:------------:|:------------:|:----------------------------------------------------------------------------------|
| [create_msk_SAS_project](https://github.com/MSKCC-Epi-Bio/create_msk_SAS_project) | 0 | 10/19/2021 | Creates a directory with the essential files for a new project that will use SAS. |
| [msk_SAS_macros](https://github.com/MSKCC-Epi-Bio/msk_SAS_macros) | 1 | 10/19/2021 | SAS macros for MSK project use |
<table>
<colgroup>
<col style="width: 17%" />
<col style="width: 10%" />
<col style="width: 10%" />
<col style="width: 61%" />
</colgroup>
<thead>
<tr class="header">
<th style="text-align: left;">Repository</th>
<th style="text-align: center;">GitHub Stars</th>
<th style="text-align: center;">Last Updated</th>
<th style="text-align: left;">About</th>
</tr>
</thead>
<tbody>
<tr class="odd">
<td style="text-align: left;"><a
href="https://github.com/MSKCC-Epi-Bio/create_msk_SAS_project">create_msk_SAS_project</a></td>
<td style="text-align: center;">0</td>
<td style="text-align: center;">10/19/2021</td>
<td style="text-align: left;">Creates a directory with the essential
files for a new project that will use SAS.</td>
</tr>
<tr class="even">
<td style="text-align: left;"><a
href="https://github.com/MSKCC-Epi-Bio/msk_SAS_macros">msk_SAS_macros</a></td>
<td style="text-align: center;">1</td>
<td style="text-align: center;">10/19/2021</td>
<td style="text-align: left;">SAS macros for MSK project use</td>
</tr>
</tbody>
</table>

------------------------------------------------------------------------

## **Presentations**

| Repository | GitHub Stars | Last Updated | About |
|:------------------------------------------------------------------------------------------------------------------------------|:------------:|:------------:|:------|
| [contributing-to-an-R-pkg](https://github.com/MSKCC-Epi-Bio/contributing-to-an-R-pkg) | 0 | 04/04/2022 | |
| [introduction-to-msk-impact](https://github.com/MSKCC-Epi-Bio/introduction-to-msk-impact) | 0 | 09/06/2022 | |
| [Reproducibility-in-R-with-renv-and-templates](https://github.com/MSKCC-Epi-Bio/Reproducibility-in-R-with-renv-and-templates) | 3 | 05/13/2022 | |
| [Writing-Functions-with-the-tidyverse](https://github.com/MSKCC-Epi-Bio/Writing-Functions-with-the-tidyverse) | 4 | 11/01/2022 | |
<table>
<colgroup>
<col style="width: 56%" />
<col style="width: 17%" />
<col style="width: 17%" />
<col style="width: 7%" />
</colgroup>
<thead>
<tr class="header">
<th style="text-align: left;">Repository</th>
<th style="text-align: center;">GitHub Stars</th>
<th style="text-align: center;">Last Updated</th>
<th style="text-align: left;">About</th>
</tr>
</thead>
<tbody>
<tr class="odd">
<td style="text-align: left;"><a
href="https://github.com/MSKCC-Epi-Bio/contributing-to-an-R-pkg">contributing-to-an-R-pkg</a></td>
<td style="text-align: center;">0</td>
<td style="text-align: center;">04/04/2022</td>
<td style="text-align: left;"></td>
</tr>
<tr class="even">
<td style="text-align: left;"><a
href="https://github.com/MSKCC-Epi-Bio/introduction-to-msk-impact">introduction-to-msk-impact</a></td>
<td style="text-align: center;">0</td>
<td style="text-align: center;">09/06/2022</td>
<td style="text-align: left;"></td>
</tr>
<tr class="odd">
<td style="text-align: left;"><a
href="https://github.com/MSKCC-Epi-Bio/Reproducibility-in-R-with-renv-and-templates">Reproducibility-in-R-with-renv-and-templates</a></td>
<td style="text-align: center;">3</td>
<td style="text-align: center;">05/13/2022</td>
<td style="text-align: left;"></td>
</tr>
<tr class="even">
<td style="text-align: left;"><a
href="https://github.com/MSKCC-Epi-Bio/Writing-Functions-with-the-tidyverse">Writing-Functions-with-the-tidyverse</a></td>
<td style="text-align: center;">4</td>
<td style="text-align: center;">11/01/2022</td>
<td style="text-align: left;"></td>
</tr>
</tbody>
</table>

------------------------------------------------------------------------

Expand Down

0 comments on commit f34dba7

Please sign in to comment.