add libhdf5-dev dependency for aoflagger #14
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| # Based on https://github.com/actions-rs/meta/blob/master/recipes/quickstart.md | |
| on: [push, pull_request] | |
| name: Generate Coverage report | |
| jobs: | |
| coverage: | |
| runs-on: ubuntu-latest | |
| container: mwatelescope/birli:latest | |
| steps: | |
| - name: Checkout sources | |
| uses: actions/checkout@v2 | |
| with: | |
| fetch-depth: 0 | |
| - name: Install nightly toolchain | |
| run: | | |
| rustup set profile minimal | |
| rustup toolchain install nightly-2021-05-09 --component llvm-tools-preview | |
| rustup default nightly-2021-05-09 | |
| - name: Install Cargo Make | |
| uses: davidB/rust-cargo-make@v1 | |
| # - name: Install cargo-make from crates.io | |
| # uses: baptiste0928/cargo-install@v3 | |
| # with: | |
| # crate: cargo-make | |
| # version: '^0.37.16' | |
| - name: Install cargo-binutils from crates.io | |
| uses: baptiste0928/cargo-install@v3 | |
| with: | |
| crate: cargo-binutils | |
| version: '^0.3.6' | |
| - name: Generate test lcov coverage into coverage/ dir | |
| env: | |
| RUSTFLAGS: -Zinstrument-coverage | |
| LLVM_PROFILE_FILE: json5format-%m.profraw | |
| run: | | |
| mkdir -p coverage | |
| # TODO: thisn't | |
| cargo update -p proc-macro2 --precise 1.0.28 || echo "cargo update proc-macro2 failed" | |
| cargo update -p approx:0.5.0 --precise 0.4.0 || echo "cargo update approx failed" | |
| cargo update -p ndarray:0.15.3 --precise 0.14.0 || echo "cargo update ndarray failed" | |
| cargo test -- --include-ignored | |
| cargo profdata -- \ | |
| merge -sparse json5format-*.profraw -o json5format.profdata | |
| cargo cov -- export --format=lcov \ | |
| --ignore-filename-regex='(/.cargo/registry|/rustc|test.rs$)' \ | |
| --instr-profile=json5format.profdata \ | |
| $(cargo test --tests --no-run --message-format=json | jq -r ' | |
| select(.profile.test == true) | |
| | .filenames[] | |
| | select(endswith(".dSYM")|not) | |
| | " -object \(.)" | |
| ') \ | |
| > coverage/coverage.lcov | |
| - name: Upload reports to codecov.io | |
| uses: codecov/codecov-action@v1 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} |